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MW825358.1__QVD49227.1__LUCX_157__00157
Bact-VirMW825358.1__QVD49227.1__LUCX_157__00157
Identity
- Accession:
- MW825358 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Taxonomy
TaxID: 2829408
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 52.0 | 4.54e-01 | 73.2% | 48.8% |
| 1go3F01 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.75 | 57.0 | 5.63e-01 | 85.7% | 76.7% |
| 2pmzF02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.74 | 49.0 | 5.51e-01 | 76.8% | 100.0% |
| 3ci0K02 | 1.10.40.60 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like | 0.70 | 54.0 | 4.28e-01 | 83.9% | 69.9% |
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 48.0 | 5.20e-01 | 73.2% | 100.0% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.67 | 48.0 | 4.45e-01 | 76.8% | 73.6% |
| 6yetA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 54.0 | 4.66e-01 | 92.9% | 63.7% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.66 | 51.0 | 3.80e-01 | 83.9% | 39.3% |
| 3f2bA07 | 6.10.140.1510 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 46.0 | 4.05e-01 | 80.4% | 50.0% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.65 | 56.0 | 4.48e-01 | 98.2% | 67.3% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 52.0 | 3.33e-01 | 94.6% | 96.4% |
| 3ie7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 54.0 | 3.43e-01 | 100.0% | 95.5% |
| 1wivA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 51.0 | 4.68e-01 | 91.1% | 68.5% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 42.0 | 4.16e-01 | 71.4% | 80.3% |
| 3e70C01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 50.0 | 4.26e-01 | 92.9% | 63.9% |
| 1ie9A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.61 | 46.0 | 3.01e-01 | 82.1% | 46.3% |
| 2d6fC03 | 1.10.150.380 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain | 0.60 | 49.0 | 5.11e-01 | 96.4% | 96.2% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.60 | 51.0 | 4.73e-01 | 92.9% | 88.6% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 48.0 | 3.69e-01 | 100.0% | 57.2% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.55 | 48.0 | 3.67e-01 | 100.0% | 60.3% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 46.0 | 4.04e-01 | 100.0% | 88.5% |
| 2hezA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.50 | 38.0 | 2.45e-01 | 83.9% | 22.5% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 3.76e-01 | 100.0% | 94.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4207710 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.76 | 54.0 | 5.42e-01 | 75.0% | 86.2% |
| 5059609 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 58.0 | 4.88e-01 | 85.7% | 60.0% |
| 3295850 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 56.0 | 5.83e-01 | 94.6% | 96.0% |
| 3276922 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 52.0 | 5.30e-01 | 78.6% | 83.6% |
| 3802239 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 51.0 | 5.36e-01 | 76.8% | 100.0% |
| 4303377 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 46.0 | 4.82e-01 | 73.2% | 100.0% |
| 3807913 | 207.1.1.77 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD | 0.65 | 51.0 | 3.07e-01 | 89.3% | 12.1% |
| 3722991 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.64 | 43.0 | 3.56e-01 | 98.2% | 39.0% |
| 4982021 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.62 | 58.0 | 4.41e-01 | 100.0% | 60.8% |
| 4926851 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 54.0 | 5.36e-01 | 98.2% | 96.7% |
| 2840 | 101.1.10.16 ↗ | alpha arrays › HTH › HTH › Cyclin-like › V-cyclin_C | 0.62 | 46.0 | 3.81e-01 | 80.4% | 84.0% |
| 5002469 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.61 | 57.0 | 4.65e-01 | 100.0% | 76.8% |
| 4960728 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.61 | 48.0 | 2.84e-01 | 87.5% | 97.9% |
| 3279331 | 101.1.2.612 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 | 0.60 | 54.0 | 3.89e-01 | 100.0% | 50.0% |
| 3451017 | 604.1.1.242 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28744 | 0.60 | 45.0 | 3.40e-01 | 87.5% | 79.4% |
| 1038614 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.59 | 47.0 | 4.72e-01 | 89.3% | 91.4% |
| 4947197 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 51.0 | 4.15e-01 | 94.6% | 70.0% |
| 5065605 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.57 | 49.0 | 3.88e-01 | 92.9% | 62.7% |
| 5073938 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.56 | 48.0 | 4.17e-01 | 92.9% | 81.2% |
| 4947315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 51.0 | 4.04e-01 | 100.0% | 64.5% |
| 4997228 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.56 | 49.0 | 4.14e-01 | 100.0% | 76.8% |