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MW825358.1__QVD49239.1__LUCX_169__00169

Bact-Vir

MW825358.1__QVD49239.1__LUCX_169__00169

Identity

Accession:
MW825358 ↗
Kingdom:
phage

Quality

48.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_vB_XciM_LucasX

TaxID: 2829408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-113
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lciA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.70 48.0 4.12e-01 93.6% 44.2%
4fuqC01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.67 48.0 2.83e-01 93.6% 8.9%
2g5gX01 3.40.50.11550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 48.0 3.21e-01 85.1% 100.0%
2incC00 3.10.20.270 Alpha Beta › Roll › Ubiquitin-like (UB roll) › TmoB-like 0.62 52.0 4.44e-01 100.0% 80.7%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.61 50.0 3.83e-01 95.7% 50.8%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.33e-01 100.0% 85.9%
2hivA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.61 48.0 3.18e-01 89.4% 42.2%
2dzkA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 47.0 4.24e-01 100.0% 97.4%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 4.07e-01 100.0% 69.8%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 47.0 3.99e-01 100.0% 90.0%
2p3yA04 2.60.120.600 Mainly Beta › Sandwich › Jelly Rolls › Domain of unknown function DUF1214, C-terminal domain 0.58 47.0 3.34e-01 100.0% 54.3%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.03e-01 100.0% 82.8%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 4.00e-01 97.9% 98.8%
3bp6B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.79e-01 100.0% 73.5%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.54 36.0 3.90e-01 100.0% 89.2%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.64e-01 100.0% 79.1%
1qfoC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.41e-01 100.0% 80.7%
1r17A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.07e-01 100.0% 79.7%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.52 41.0 3.14e-01 100.0% 55.5%
2dmkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.26e-01 100.0% 72.8%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.50 38.0 3.12e-01 100.0% 78.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3335110 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 57.0 3.60e-01 100.0% 21.7%
4024182 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 47.0 4.07e-01 70.2% 49.3%
3995853 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 56.0 3.38e-01 91.5% 32.1%
3528571 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.62 41.0 2.74e-01 70.2% 23.3%
1807481 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.62 48.0 3.10e-01 87.2% 70.3%
3486117 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.61 40.0 2.68e-01 70.2% 22.3%
119248 375.1.1.146 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.57 39.0 3.99e-01 72.3% 85.7%
5010050 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.68e-01 100.0% 72.4%
3398495 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 43.0 3.59e-01 100.0% 78.0%
3196969 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 40.0 3.59e-01 87.2% 68.6%
3887184 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.51 40.0 2.72e-01 95.7% 48.3%
4955752 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.50 40.0 2.76e-01 100.0% 39.5%