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MW825358.1__QVD49285.1__LUCX_215__00215

Bact-Vir

MW825358.1__QVD49285.1__LUCX_215__00215

Identity

Accession:
MW825358 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_vB_XciM_LucasX

TaxID: 2829408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-135
PDB
Domain cluster: rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00151__D51-138
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 34.0 4.90e-01 72.7% 100.0%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 37.0 4.01e-01 76.8% 67.1%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.79e-01 98.0% 96.8%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.39e-01 79.8% 89.2%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 4.12e-01 86.9% 90.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 3.45e-01 79.8% 58.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 33.0 3.87e-01 99.0% 91.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.13e-01 90.9% 86.7%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.99e-01 88.9% 95.6%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.99e-01 82.8% 94.5%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.58e-01 70.7% 82.0%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 45.0 3.39e-01 100.0% 40.8%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.51 45.0 3.78e-01 99.0% 64.9%
4oifA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 43.0 3.41e-01 96.0% 81.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4116754 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 36.0 5.26e-01 72.7% 100.0%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 37.0 4.73e-01 88.9% 92.7%
3308604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 43.0 4.84e-01 98.0% 89.3%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 40.0 4.48e-01 93.9% 89.3%
3164898 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.57 34.0 3.47e-01 78.8% 58.9%
3926623 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 37.0 4.16e-01 78.8% 89.0%
3955235 4.1.1.183 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4926 0.56 39.0 4.29e-01 97.0% 88.7%
3482663 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 35.0 3.95e-01 94.9% 90.0%
3231135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.61e-01 70.7% 85.5%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.54 34.0 3.92e-01 85.9% 91.4%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.52 39.0 4.07e-01 92.9% 88.9%
1289560 219.1.1.10 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C10 0.51 46.0 3.20e-01 98.0% 77.4%
3460634 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.50 37.0 3.39e-01 79.8% 82.1%
3398510 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.50 39.0 2.66e-01 86.9% 55.2%
D2 high residues 144-207
PDB