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MW825358.1__QVD49332.1__LUCX_262__00262

Bact-Vir

MW825358.1__QVD49332.1__LUCX_262__00262

Identity

Accession:
MW825358 ↗
Kingdom:
phage

Quality

68.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_vB_XciM_LucasX

TaxID: 2829408

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-184
PDB
Domain cluster: rep: OR413585.1__WNT48503.1__SPLA5c_PHROGS00010__00010__D11-159
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.71 67.0 6.38e-01 99.5% 92.5%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.70 66.0 6.19e-01 100.0% 91.3%
1ryp100 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.69 65.0 6.10e-01 100.0% 95.0%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.68 63.0 6.20e-01 99.5% 97.0%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 63.0 6.00e-01 100.0% 94.3%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.65 61.0 5.24e-01 100.0% 82.6%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.64 59.0 4.95e-01 100.0% 85.8%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.63 58.0 4.85e-01 98.9% 94.8%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.62 58.0 5.63e-01 100.0% 98.5%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.61 31.0 3.68e-01 84.8% 68.8%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.61 55.0 4.60e-01 98.4% 92.7%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.57 16.0 3.06e-01 94.6% 86.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 18.0 3.08e-01 82.1% 98.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3723643 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.72 68.0 6.13e-01 100.0% 79.8%
3201324 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.72 68.0 5.99e-01 100.0% 75.2%
3918491 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.72 68.0 6.11e-01 100.0% 83.2%
4023773 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.71 67.0 5.87e-01 100.0% 90.0%
3998259 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.70 67.0 6.11e-01 100.0% 83.3%
3644082 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.70 66.0 5.96e-01 100.0% 82.3%
5047706 210.1.2.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.68 64.0 5.56e-01 100.0% 90.4%
4505764 210.1.2.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 0.67 62.0 4.67e-01 100.0% 70.2%
3688327 210.1.2.7 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta 0.64 60.0 4.59e-01 100.0% 74.4%
3639490 210.1.2.7 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta 0.63 59.0 4.56e-01 100.0% 70.8%
5024247 210.1.1.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.63 58.0 5.70e-01 98.9% 98.5%
3604107 210.1.1.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.62 57.0 5.55e-01 98.9% 98.5%
4996362 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.55 30.0 3.85e-01 70.1% 88.9%
5007551 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.53 30.0 3.74e-01 70.7% 85.8%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 28.0 3.81e-01 70.1% 95.0%
3262415 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 30.0 3.84e-01 70.1% 89.6%
3250597 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 29.0 3.82e-01 71.7% 93.6%
3917637 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 30.0 3.37e-01 70.1% 70.7%
3891317 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 32.0 3.76e-01 73.9% 86.7%
3176453 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 32.0 3.66e-01 73.9% 82.9%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 30.0 3.71e-01 70.7% 92.2%
4034521 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.51 28.0 3.79e-01 70.7% 100.0%
3548037 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 31.0 3.69e-01 73.9% 86.9%
3992564 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 29.0 3.34e-01 70.1% 75.0%
3789025 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 30.0 3.52e-01 73.9% 81.5%
5072273 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 30.0 3.78e-01 70.1% 93.3%