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MW825358.1__QVD49344.1__LUCX_274__00274

Bact-Vir

MW825358.1__QVD49344.1__LUCX_274__00274

Identity

Accession:
MW825358 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_vB_XciM_LucasX

TaxID: 2829408

Cluster

View cluster (47 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-77
PDB
Domain cluster: rep: MW879341.1__QXO10862.1__pEaSNUABM54_00036__00036__D11-77
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.63 47.0 3.56e-01 79.1% 95.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.63 40.0 4.49e-01 79.1% 89.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 39.0 3.08e-01 76.1% 29.6%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 4.90e-01 100.0% 70.0%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.62 39.0 3.20e-01 70.1% 34.1%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.62 39.0 3.15e-01 71.6% 34.4%
6vftD04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 41.0 3.61e-01 71.6% 61.5%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.49e-01 85.1% 42.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.43e-01 97.0% 74.3%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.56e-01 79.1% 70.2%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.59 39.0 4.29e-01 91.0% 88.2%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 46.0 3.63e-01 83.6% 88.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 3.99e-01 100.0% 56.3%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 44.0 3.56e-01 100.0% 41.5%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.35e-01 100.0% 85.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 42.0 3.99e-01 100.0% 67.1%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 41.0 3.83e-01 100.0% 60.5%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 50.0 3.69e-01 100.0% 97.8%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 36.0 3.46e-01 86.6% 57.7%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.54 46.0 4.06e-01 95.5% 98.0%
6grrA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.04e-01 100.0% 75.5%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 34.0 2.91e-01 77.6% 35.9%
3h3iA00 2.40.128.220 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.73e-01 100.0% 68.8%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.54 45.0 3.50e-01 95.5% 41.6%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.52 43.0 3.64e-01 92.5% 67.2%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.52 36.0 2.79e-01 76.1% 53.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.78e-01 100.0% 69.9%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 45.0 2.97e-01 100.0% 45.1%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 30.0 2.69e-01 97.0% 35.3%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 42.0 3.50e-01 100.0% 49.6%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.97e-01 100.0% 86.4%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 40.0 3.53e-01 91.0% 57.0%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.51 43.0 3.34e-01 98.5% 73.9%
3ubgB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 45.0 4.00e-01 100.0% 71.9%
3qugA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.73e-01 100.0% 90.3%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 30.0 2.62e-01 70.1% 34.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4634682 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.68 44.0 3.53e-01 76.1% 34.6%
3651763 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.66 37.0 4.49e-01 71.6% 92.5%
3831392 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.61 43.0 3.02e-01 76.1% 23.3%
5037743 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.61 42.0 3.63e-01 89.6% 45.7%
4085005 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 42.0 3.33e-01 76.1% 58.0%
3715079 3186.1.1.0 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.60 40.0 3.48e-01 71.6% 46.1%
3841163 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.59 46.0 4.26e-01 100.0% 65.6%
3717505 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 3.64e-01 71.6% 54.1%
3934522 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 50.0 4.55e-01 100.0% 71.6%
3626667 5.1.4.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.57 50.0 3.07e-01 95.5% 24.4%
3503754 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 3.88e-01 98.5% 67.3%
1032394 3480.1.1.1 ↗ a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.57 46.0 3.82e-01 88.1% 81.2%
4002086 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 2.91e-01 74.6% 30.0%
3998224 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 44.0 3.50e-01 95.5% 40.7%
3453930 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 3.00e-01 97.0% 21.8%
5076824 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 43.0 2.77e-01 98.5% 16.3%
3603359 4.1.1.459 ↗ beta barrels › SH3 › SH3 › SH3 › PF29994 0.56 44.0 3.86e-01 100.0% 55.5%
4203120 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 40.0 2.50e-01 100.0% 12.4%
4230296 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.54 42.0 3.67e-01 86.6% 97.2%
3620302 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 47.0 3.14e-01 100.0% 33.0%
4161633 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.54 44.0 3.86e-01 89.6% 99.0%
4081706 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.54 43.0 3.73e-01 86.6% 98.1%
4467756 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.54 46.0 4.06e-01 97.0% 96.1%
6428 243.5.1.2 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 0.54 46.0 3.94e-01 100.0% 69.6%
4842604 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.54 44.0 3.99e-01 95.5% 64.6%
3693121 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 41.0 3.54e-01 83.6% 60.0%
4012633 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.54 36.0 2.80e-01 77.6% 29.1%
3259637 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 41.0 3.15e-01 86.6% 52.6%
1283692 2.1.1.102 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCEL_GT_OB 0.53 36.0 2.93e-01 77.6% 35.8%
1829536 6173.1.1.0 ↗ beta barrels › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 0.53 36.0 3.91e-01 76.1% 92.2%
4502561 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.53 46.0 4.03e-01 97.0% 97.0%
3574380 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 43.0 3.11e-01 91.0% 35.7%
3480950 243.9.1.2 ↗ a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 0.53 45.0 3.98e-01 100.0% 73.3%
3429294 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 47.0 3.84e-01 100.0% 95.2%
4294240 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.53 40.0 3.53e-01 85.1% 96.2%
4019547 319.1.1.8 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.52 42.0 3.58e-01 100.0% 53.0%
3602312 325.1.6.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase 0.52 41.0 3.10e-01 88.1% 62.9%
4004011 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.28e-01 79.1% 56.4%
3460645 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 37.0 2.32e-01 76.1% 13.7%
4422887 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.51 41.0 3.66e-01 91.0% 96.0%
4136005 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.51 40.0 3.62e-01 91.0% 99.0%
4968157 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.97e-01 100.0% 78.9%
4116229 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.51 38.0 3.46e-01 86.6% 100.0%
3212498 243.3.1.70 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF30099 0.50 39.0 3.70e-01 100.0% 68.9%
3649440 3946.1.1.1 ↗ beta duplicates or obligate multimers › Pleurotolysin B C-terminal domain › Pleurotolysin B C-terminal domain › Pleurotolysin B C-terminal domain › Vps62 0.50 42.0 3.12e-01 95.5% 39.5%
3907497 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.50 34.0 2.42e-01 70.1% 22.7%
D2 high residues 80-151
PDB
Domain cluster: rep: LC667451.1__BDD79839.1__X__00320__D73-157