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MW825358.1__QVD49386.1__LUCX_316__00316
Bact-VirMW825358.1__QVD49386.1__LUCX_316__00316
Identity
- Accession:
- MW825358 ↗
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Taxonomy
TaxID: 2829408
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-78
D2
medium
residues 79-145
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.76 | 63.0 | 5.44e-01 | 91.0% | 64.4% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 68.0 | 5.88e-01 | 100.0% | 91.2% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 55.0 | 5.82e-01 | 82.1% | 100.0% |
| 3rrcB01 | 1.20.1310.20 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain | 0.73 | 58.0 | 4.43e-01 | 88.1% | 67.1% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 50.0 | 5.12e-01 | 83.6% | 75.8% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 50.0 | 5.10e-01 | 80.6% | 98.5% |
| 2do7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 55.0 | 5.25e-01 | 89.6% | 75.0% |
| 5dckA00 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.67 | 48.0 | 4.75e-01 | 76.1% | 93.0% |
| 4bwcA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.66 | 47.0 | 3.85e-01 | 74.6% | 92.3% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.66 | 51.0 | 4.64e-01 | 85.1% | 80.2% |
| 5z62E00 | 1.25.40.40 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI | 0.65 | 46.0 | 4.00e-01 | 76.1% | 51.4% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 40.0 | 3.87e-01 | 79.1% | 56.8% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.70e-01 | 82.1% | 89.3% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.63 | 51.0 | 4.67e-01 | 92.5% | 89.1% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 43.0 | 4.24e-01 | 73.1% | 79.7% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.62 | 43.0 | 4.25e-01 | 80.6% | 67.6% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 34.0 | 4.12e-01 | 83.6% | 83.3% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.62 | 46.0 | 3.89e-01 | 80.6% | 84.6% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 41.0 | 4.50e-01 | 76.1% | 100.0% |
| 2m8gX00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 45.0 | 4.52e-01 | 95.5% | 77.1% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 39.0 | 4.13e-01 | 82.1% | 74.1% |
| 3ehfB01 | 6.10.250.2870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 42.0 | 3.61e-01 | 83.6% | 47.1% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 47.0 | 4.07e-01 | 89.6% | 87.2% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 49.0 | 4.26e-01 | 94.0% | 91.7% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.59 | 38.0 | 3.96e-01 | 82.1% | 72.1% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.59 | 44.0 | 3.64e-01 | 82.1% | 72.0% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.58 | 44.0 | 3.86e-01 | 83.6% | 63.6% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 41.0 | 4.09e-01 | 83.6% | 70.4% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.57 | 45.0 | 4.16e-01 | 89.6% | 70.0% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.57 | 42.0 | 3.91e-01 | 79.1% | 64.0% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 3.73e-01 | 76.1% | 57.8% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 39.0 | 3.52e-01 | 76.1% | 51.1% |
| 6ddtA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 49.0 | 3.11e-01 | 100.0% | 22.1% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 38.0 | 3.60e-01 | 71.6% | 59.0% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 39.0 | 4.02e-01 | 74.6% | 89.2% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.56 | 46.0 | 4.11e-01 | 92.5% | 90.7% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 39.0 | 4.06e-01 | 74.6% | 84.1% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 46.0 | 3.82e-01 | 92.5% | 80.3% |
| 4o1jA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.55 | 48.0 | 3.46e-01 | 100.0% | 34.5% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 42.0 | 3.04e-01 | 83.6% | 31.8% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 38.0 | 4.06e-01 | 74.6% | 91.4% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.24e-01 | 95.5% | 97.0% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 42.0 | 3.23e-01 | 91.0% | 85.6% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.52 | 40.0 | 3.69e-01 | 82.1% | 73.3% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.51 | 36.0 | 3.65e-01 | 83.6% | 74.3% |
| 1puoB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 42.0 | 3.37e-01 | 94.0% | 82.4% |
| 2qmaA01 | 1.20.1650.10 | Mainly Alpha › Up-down Bundle › PLP-dependent transferase-like › PLP-dependent transferases | 0.51 | 43.0 | 3.99e-01 | 94.0% | 77.9% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.50 | 36.0 | 3.67e-01 | 85.1% | 75.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033612 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.75 | 52.0 | 5.79e-01 | 82.1% | 100.0% |
| 3614685 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 56.0 | 5.99e-01 | 97.0% | 98.2% |
| 3327522 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.74 | 59.0 | 5.88e-01 | 92.5% | 84.3% |
| 4057625 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 55.0 | 5.90e-01 | 97.0% | 98.2% |
| 4945144 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 54.0 | 5.24e-01 | 85.1% | 76.0% |
| 4438233 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.70 | 62.0 | 5.35e-01 | 100.0% | 72.4% |
| 4323404 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.70 | 58.0 | 5.78e-01 | 92.5% | 91.4% |
| 3500138 | 564.1.1.0 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors | 0.70 | 51.0 | 5.36e-01 | 80.6% | 86.7% |
| 3174373 | 101.1.2.780 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF31199 | 0.69 | 56.0 | 5.45e-01 | 89.6% | 81.3% |
| 4489939 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.69 | 54.0 | 5.62e-01 | 86.6% | 96.7% |
| 3224625 | 101.1.2.374 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD | 0.69 | 56.0 | 5.41e-01 | 89.6% | 81.3% |
| 3684605 | 109.58.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain | 0.68 | 56.0 | 4.57e-01 | 89.6% | 49.6% |
| 4115902 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.68 | 50.0 | 5.32e-01 | 82.1% | 96.4% |
| 4106845 | 101.35.1.26 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2, RecX_HTH3 | 0.67 | 52.0 | 4.59e-01 | 85.1% | 57.0% |
| 3250041 | 101.1.2.525 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7646 | 0.67 | 54.0 | 3.68e-01 | 88.1% | 26.2% |
| 3279756 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.65 | 53.0 | 4.17e-01 | 89.6% | 51.4% |
| 3613393 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 50.0 | 4.82e-01 | 86.6% | 82.5% |
| 3960393 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 53.0 | 4.47e-01 | 94.0% | 65.0% |
| 3495156 | 109.58.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C | 0.64 | 50.0 | 4.69e-01 | 86.6% | 72.9% |
| 3430744 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.62 | 36.0 | 3.08e-01 | 79.1% | 35.5% |
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 46.0 | 4.78e-01 | 83.6% | 91.7% |
| 3838401 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.60 | 45.0 | 4.07e-01 | 83.6% | 58.0% |
| 4124570 | 1054.1.1.1 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C | 0.60 | 36.0 | 4.26e-01 | 71.6% | 91.1% |
| 4948085 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 52.0 | 4.59e-01 | 100.0% | 99.0% |
| 2755249 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.59 | 45.0 | 3.96e-01 | 83.6% | 68.0% |
| 4999419 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.58 | 50.0 | 3.36e-01 | 100.0% | 64.6% |
| 4888757 | 2004.1.1.183 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 | 0.58 | 44.0 | 3.66e-01 | 83.6% | 56.7% |
| 5044345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 3.99e-01 | 79.1% | 68.8% |
| 3229646 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.57 | 44.0 | 3.04e-01 | 85.1% | 68.1% |
| 3996708 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 41.0 | 3.31e-01 | 74.6% | 43.8% |
| 4438177 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.56 | 44.0 | 2.55e-01 | 94.0% | 8.5% |
| 3742744 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 45.0 | 3.76e-01 | 92.5% | 84.0% |
| 3196382 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.61e-01 | 94.0% | 90.0% |
| 4133095 | 601.2.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 | 0.55 | 44.0 | 3.61e-01 | 88.1% | 68.0% |
| 3438832 | 109.4.1.1308 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 | 0.54 | 42.0 | 2.62e-01 | 97.0% | 14.0% |
| 3597591 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.53 | 37.0 | 3.72e-01 | 73.1% | 81.4% |
| 3276222 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.52 | 43.0 | 3.03e-01 | 92.5% | 93.0% |
| 3755128 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.52 | 37.0 | 3.35e-01 | 74.6% | 58.9% |