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MW845758.1__QXO09634.1__pEaSNUABM11_00210__00198

Bact-Vir

MW845758.1__QXO09634.1__pEaSNUABM11_00210__00198

Identity

Accession:
MW845758 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Wellingtonvirus› Erwinia_phage_pEa_SNUABM_11

TaxID: 2859245

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 49.0 4.20e-01 85.7% 75.2%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.62 48.0 4.37e-01 88.6% 90.1%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 42.0 3.74e-01 71.4% 83.3%
2zueA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 46.0 3.93e-01 87.1% 73.1%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 43.0 4.06e-01 82.9% 83.5%
4ohcC00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 46.0 3.36e-01 100.0% 93.6%
1ihuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.21e-01 100.0% 46.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 34.0 3.17e-01 72.9% 54.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504302 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 43.0 3.89e-01 71.4% 87.0%
3381755 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.57 38.0 2.55e-01 70.0% 65.8%
3484908 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 36.0 3.27e-01 75.7% 87.6%
4021017 3266.1.1.1 ↗ alpha arrays › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1_C 0.51 37.0 3.82e-01 77.1% 100.0%
D2 high residues 87-179
PDB
Domain cluster: rep: NC_031107.2__YP_009290824.1__ASESINO_206__00194__D91-177
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 39.0 3.94e-01 94.6% 56.8%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.60 33.0 3.88e-01 74.2% 79.0%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 33.0 3.50e-01 74.2% 67.5%
4z7aA03 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.54 41.0 3.73e-01 82.8% 82.4%
3h09B02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 38.0 2.41e-01 81.7% 14.3%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 40.0 3.93e-01 95.7% 73.8%
3w6wB01 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.51 40.0 2.67e-01 86.0% 52.7%
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 38.0 3.88e-01 87.1% 80.6%
2yevB02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 39.0 2.98e-01 83.9% 47.8%
6kobB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 39.0 3.32e-01 83.9% 67.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924470 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 38.0 3.86e-01 86.0% 61.1%
3839864 4333.1.1.1 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.55 40.0 2.74e-01 78.5% 47.7%
4388541 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.53 38.0 3.48e-01 74.2% 66.7%
4583718 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 31.0 3.02e-01 95.7% 49.5%
3971108 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 35.0 3.57e-01 95.7% 70.0%
3621417 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.52 34.0 2.42e-01 74.2% 21.0%
3612616 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 40.0 4.00e-01 87.1% 80.0%
4129628 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 35.0 2.86e-01 82.8% 37.1%
5054626 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.51 39.0 3.89e-01 95.7% 79.0%
4568780 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 28.0 3.35e-01 74.2% 87.3%
4215372 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.50 40.0 3.91e-01 95.7% 79.0%