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MW862109.1__QVW29076.1__Medea1_0009__00009

Bact-Vir

MW862109.1__QVW29076.1__Medea1_0009__00009

Identity

Accession:
MW862109 ↗
Kingdom:
phage

Quality

96.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-20_65-109_141-191
PDB
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 45.0 4.50e-01 100.0% 61.2%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 48.0 5.33e-01 99.1% 88.8%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 47.0 5.39e-01 97.4% 94.0%
3mcnA01 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.69 50.0 4.66e-01 98.3% 59.9%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 48.0 5.31e-01 100.0% 94.4%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 52.0 5.30e-01 100.0% 83.9%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.68 52.0 4.74e-01 97.4% 61.8%
4cyuA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.67 53.0 4.79e-01 99.1% 63.0%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.66 57.0 4.55e-01 93.1% 91.2%
8p5sA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.66 57.0 4.49e-01 93.1% 91.5%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 44.0 4.74e-01 99.1% 80.4%
2ii3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.66 57.0 4.56e-01 94.0% 91.5%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 57.0 4.56e-01 94.0% 92.8%
3maeA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 56.0 4.45e-01 93.1% 87.6%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 53.0 5.60e-01 97.4% 98.1%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 5.51e-01 98.3% 96.0%
1dpbA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 56.0 4.37e-01 93.1% 84.0%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.65 51.0 5.29e-01 100.0% 89.8%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 58.0 5.63e-01 100.0% 95.3%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 56.0 4.52e-01 93.1% 88.3%
3fotA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 58.0 4.56e-01 100.0% 83.3%
6h05A00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 55.0 4.34e-01 93.1% 86.4%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 55.0 4.46e-01 94.0% 91.8%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.63 52.0 5.49e-01 88.8% 100.0%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 52.0 5.46e-01 98.3% 96.3%
1ivzA00 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.61 55.0 5.32e-01 100.0% 89.4%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 5.42e-01 97.4% 97.4%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 5.42e-01 97.4% 96.5%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 5.33e-01 97.4% 96.3%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 5.27e-01 99.1% 96.3%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.47e-01 99.1% 80.6%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.61 53.0 4.31e-01 94.8% 89.7%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.60 41.0 4.70e-01 82.8% 100.0%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.60 43.0 4.15e-01 100.0% 64.9%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 53.0 5.33e-01 99.1% 95.7%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 53.0 5.37e-01 98.3% 96.6%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 52.0 5.30e-01 97.4% 96.5%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 52.0 5.09e-01 98.3% 97.7%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 5.13e-01 99.1% 96.4%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.59 45.0 4.81e-01 92.2% 96.0%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.58 51.0 4.84e-01 100.0% 91.6%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 50.0 4.37e-01 94.8% 87.2%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 50.0 4.37e-01 94.8% 81.4%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 52.0 4.45e-01 100.0% 90.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 4.49e-01 94.0% 96.1%
5i8fA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 48.0 4.34e-01 94.0% 91.5%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 48.0 4.45e-01 93.1% 100.0%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 47.0 4.42e-01 93.1% 99.3%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 49.0 4.18e-01 100.0% 88.4%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 4.13e-01 91.4% 86.2%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.70e-01 99.1% 87.5%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 39.0 4.06e-01 90.5% 81.6%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 40.0 4.19e-01 94.8% 84.0%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.88e-01 97.4% 70.5%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 4.25e-01 100.0% 84.7%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.54 42.0 4.21e-01 100.0% 79.3%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 49.0 4.01e-01 100.0% 80.6%
5jxzA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 46.0 3.31e-01 95.7% 66.0%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 32.0 3.57e-01 74.1% 73.1%
2g47A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 48.0 3.87e-01 100.0% 73.0%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 38.0 3.74e-01 89.7% 68.8%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.53 45.0 3.45e-01 99.1% 40.4%
4lrzE01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 37.0 3.31e-01 77.6% 82.0%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.97e-01 99.1% 91.1%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.50 32.0 3.42e-01 72.4% 71.4%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 44.0 3.66e-01 100.0% 82.2%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4568696 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.82 65.0 6.41e-01 100.0% 79.2%
4988375 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.82 57.0 6.48e-01 100.0% 94.3%
3408148 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.80 63.0 5.85e-01 100.0% 67.9%
1144774 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.79 73.0 6.06e-01 100.0% 79.3%
5077521 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.78 71.0 5.74e-01 98.3% 81.9%
4290777 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.77 70.0 5.95e-01 97.4% 100.0%
3633027 304.57.1.2 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › Pop8 0.74 62.0 6.17e-01 99.1% 86.7%
4986088 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 49.0 5.30e-01 100.0% 84.2%
4467967 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.72 52.0 3.81e-01 93.1% 29.1%
4992026 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.70 49.0 5.25e-01 94.0% 84.7%
4596185 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.67 44.0 5.16e-01 97.4% 100.0%
3340998 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.67 58.0 4.54e-01 93.1% 84.3%
3619535 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.67 57.0 5.77e-01 100.0% 94.7%
3613096 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.66 57.0 4.30e-01 93.1% 76.0%
4943905 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.66 57.0 4.32e-01 93.1% 89.8%
3281285 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.66 50.0 3.90e-01 100.0% 36.9%
4011808 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.66 51.0 5.04e-01 98.3% 78.3%
4347470 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.66 57.0 4.50e-01 94.0% 87.6%
3173493 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.65 56.0 4.43e-01 93.1% 87.1%
4001734 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.65 55.0 5.56e-01 100.0% 93.0%
3874532 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.65 58.0 5.85e-01 98.3% 98.3%
4336623 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.65 56.0 4.40e-01 94.0% 85.8%
3980313 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.65 49.0 5.15e-01 94.8% 89.5%
3407396 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.64 57.0 5.70e-01 97.4% 98.3%
5064654 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.64 56.0 4.47e-01 94.0% 87.9%
4322827 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.64 56.0 4.15e-01 94.0% 72.4%
3543605 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.64 59.0 5.83e-01 100.0% 96.7%
3866917 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.64 57.0 5.55e-01 100.0% 91.5%
5008499 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.64 52.0 5.48e-01 99.1% 96.2%
4395470 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.64 53.0 5.60e-01 98.3% 100.0%
4007831 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.63 50.0 3.94e-01 98.3% 39.6%
3312048 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 57.0 5.79e-01 100.0% 99.1%
3728906 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 56.0 5.67e-01 99.1% 96.5%
5013543 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 55.0 5.61e-01 100.0% 94.8%
3893032 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.63 56.0 5.44e-01 100.0% 86.2%
3883294 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.63 57.0 5.50e-01 100.0% 94.6%
4202370 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.63 40.0 4.27e-01 96.6% 74.0%
5026741 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 55.0 5.51e-01 100.0% 92.5%
3684969 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.63 55.0 5.61e-01 99.1% 96.5%
5051978 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.63 49.0 3.84e-01 98.3% 39.2%
4955641 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 49.0 5.24e-01 99.1% 97.0%
196605 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 52.0 5.44e-01 98.3% 95.4%
3559614 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.62 56.0 5.21e-01 100.0% 89.0%
5009620 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 55.0 5.53e-01 100.0% 94.2%
5036489 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 54.0 5.49e-01 100.0% 96.5%
4383381 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 53.0 5.49e-01 96.6% 98.2%
4961625 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 55.0 5.54e-01 100.0% 97.4%
4978106 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 54.0 5.44e-01 99.1% 95.7%
3413500 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.62 50.0 3.78e-01 98.3% 36.1%
3720487 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 55.0 5.43e-01 100.0% 93.3%
2981912 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 54.0 5.47e-01 97.4% 96.5%
4965450 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 51.0 5.26e-01 100.0% 94.5%
5024124 304.15.1.0 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.61 41.0 4.69e-01 99.1% 98.8%
3590806 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 53.0 5.40e-01 99.1% 95.7%
5027749 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.61 42.0 4.53e-01 99.1% 83.0%
3839730 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.61 51.0 4.56e-01 100.0% 65.2%
4940122 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.61 42.0 4.50e-01 99.1% 82.8%
3775329 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.61 55.0 5.30e-01 100.0% 92.3%
4221224 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.61 53.0 5.48e-01 97.4% 100.0%
4932235 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.61 42.0 4.45e-01 99.1% 79.8%
4941725 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.61 41.0 4.41e-01 99.1% 81.0%
3540649 11.1.1.789 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 0.61 53.0 5.30e-01 98.3% 95.8%
4045155 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.61 44.0 4.50e-01 92.2% 79.1%
3164654 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 53.0 5.38e-01 99.1% 97.4%
2167751 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 53.0 5.35e-01 99.1% 95.0%
1268540 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 53.0 5.29e-01 100.0% 93.3%
5019207 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 54.0 5.30e-01 99.1% 96.0%
4005147 2011.1.1.23 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › M20_dimer 0.60 53.0 5.34e-01 99.1% 97.4%
3961027 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 53.0 5.16e-01 100.0% 89.6%
5310 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.60 53.0 5.29e-01 98.3% 95.7%
4258815 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.59 51.0 5.27e-01 97.4% 100.0%
3214238 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.59 42.0 4.40e-01 99.1% 81.9%
409322 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.59 41.0 4.32e-01 97.4% 79.4%
3179969 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.59 44.0 4.66e-01 100.0% 92.0%
3614265 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 51.0 5.08e-01 100.0% 93.3%
3726378 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 44.0 4.66e-01 100.0% 90.5%
3931456 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.58 51.0 4.58e-01 100.0% 78.8%
3861272 304.47.1.5 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › PF29544 0.58 48.0 4.94e-01 99.1% 97.3%
5039808 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.58 51.0 4.32e-01 98.3% 80.0%
4464468 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 42.0 4.36e-01 91.4% 80.9%
4342449 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 43.0 4.28e-01 91.4% 75.8%
3269407 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.57 50.0 4.04e-01 99.1% 73.2%
3602384 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.57 48.0 4.77e-01 96.6% 89.2%
5072826 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.56 40.0 4.39e-01 81.0% 95.5%
142220 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.56 51.0 4.23e-01 100.0% 85.5%
4567458 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 41.0 4.21e-01 90.5% 78.3%
1124197 304.141.1.1 a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 0.56 49.0 4.75e-01 100.0% 87.7%
4940988 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.55 47.0 4.84e-01 96.6% 99.1%
3971826 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.55 49.0 4.10e-01 100.0% 76.6%
3645111 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.54 49.0 3.73e-01 100.0% 66.4%
4541115 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.52 42.0 4.13e-01 94.0% 80.0%
3356876 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 41.0 4.27e-01 99.1% 96.2%
5050905 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.51 45.0 3.89e-01 100.0% 65.8%
3595555 317.1.1.0 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.51 44.0 3.58e-01 100.0% 49.8%
D2 medium residues 21-64_110-140
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 41.0 3.22e-01 73.3% 50.3%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 44.0 3.57e-01 80.0% 87.3%
1otkA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 40.0 2.83e-01 73.3% 78.3%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 3.37e-01 94.7% 95.2%
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.55 34.0 3.90e-01 96.0% 90.4%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.55 44.0 3.06e-01 92.0% 52.3%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.54 37.0 3.30e-01 70.7% 49.1%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 37.0 2.50e-01 74.7% 39.7%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 36.0 2.72e-01 73.3% 59.1%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.47e-01 100.0% 86.4%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 36.0 3.67e-01 100.0% 76.3%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 31.0 3.18e-01 81.3% 61.3%
1n2aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 43.0 3.85e-01 94.7% 78.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3470956 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.59 50.0 4.50e-01 94.7% 85.7%
3299745 207.1.1.185 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6 0.58 36.0 2.29e-01 84.0% 11.9%
3305137 3569.1.1.0 extended segments › Epidermal growth factor receptor transmembrane-juxtamembrane segment-like › Epidermal growth factor receptor transmembrane-juxtamembrane segment › Epidermal growth factor receptor transmembrane-juxtamembrane segment 0.57 35.0 3.76e-01 80.0% 71.9%
5059110 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 34.0 3.94e-01 86.7% 100.0%
4966249 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 32.0 3.76e-01 81.3% 91.1%
3930425 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 3.72e-01 89.3% 82.7%
3932780 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.55 32.0 2.94e-01 100.0% 40.0%
3377656 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.53 35.0 2.12e-01 84.0% 9.5%
4928190 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.53 31.0 3.07e-01 100.0% 50.0%
3287378 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.53 44.0 3.03e-01 92.0% 67.3%
5031215 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 30.0 3.37e-01 77.3% 74.5%
3501315 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 31.0 2.92e-01 100.0% 43.0%
4929551 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 32.0 3.42e-01 93.3% 70.8%
4142311 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.52 44.0 2.62e-01 94.7% 15.9%
3585734 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.51 35.0 2.94e-01 73.3% 86.7%
4928064 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.62e-01 100.0% 76.5%
4034390 101.1.2.453 alpha arrays › HTH › HTH › winged helix domain › WHD_DnaB 0.51 35.0 2.87e-01 72.0% 36.0%
5079277 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 32.0 3.48e-01 100.0% 82.8%
4019671 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.50 41.0 2.73e-01 90.7% 27.5%