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MW862109.1__QVW29077.1__Medea1_0010__00010
Bact-VirMW862109.1__QVW29077.1__Medea1_0010__00010
Identity
- Accession:
- MW862109 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
TaxID: 2834256
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-149
Domain cluster:
rep: ON453903.1__WAK79726.1__X__00049__D14-122
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09669.16 best | Phage_pRha | 76.5 | 2.70e-21 | 76.6% | 98.9% |
D2
high
residues 153-215
Domain cluster:
rep: AP014684.1__BAR92406.1__X__00068__D140-199
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.67 | 56.0 | 5.42e-01 | 98.4% | 81.9% |
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.65 | 39.0 | 3.61e-01 | 76.2% | 46.8% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 58.0 | 5.07e-01 | 100.0% | 72.3% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 57.0 | 5.13e-01 | 100.0% | 77.3% |
| 7r8bB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 51.0 | 3.44e-01 | 95.2% | 24.5% |
| 3qkaE02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 38.0 | 4.30e-01 | 73.0% | 88.4% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.62 | 51.0 | 4.62e-01 | 100.0% | 67.4% |
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.61 | 52.0 | 4.57e-01 | 100.0% | 77.0% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.61 | 51.0 | 3.58e-01 | 100.0% | 47.6% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.60 | 43.0 | 4.07e-01 | 76.2% | 69.2% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.59 | 47.0 | 3.87e-01 | 90.5% | 53.2% |
| 5kjpA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.58 | 43.0 | 4.52e-01 | 81.0% | 100.0% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 48.0 | 4.82e-01 | 100.0% | 93.9% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.57 | 35.0 | 3.50e-01 | 73.0% | 58.7% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 40.0 | 3.13e-01 | 74.6% | 100.0% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 37.0 | 3.65e-01 | 100.0% | 61.4% |
| 2qvwB05 | 1.10.1740.150 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.56 | 36.0 | 3.45e-01 | 95.2% | 55.3% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 48.0 | 3.35e-01 | 100.0% | 42.9% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.55 | 39.0 | 3.66e-01 | 76.2% | 63.3% |
| 3o8jA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.55 | 42.0 | 3.71e-01 | 100.0% | 55.6% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 39.0 | 3.33e-01 | 76.2% | 74.3% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.53 | 42.0 | 4.23e-01 | 100.0% | 90.9% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.77e-01 | 98.4% | 95.1% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.50 | 39.0 | 3.59e-01 | 85.7% | 96.5% |
| 7y8uF01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 38.0 | 2.83e-01 | 87.3% | 50.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589701 | 632.24.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › ORF6C | 0.87 | 79.0 | 7.07e-01 | 100.0% | 83.5% |
| 3387918 | 207.9.1.3 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 | 0.74 | 67.0 | 4.20e-01 | 100.0% | 20.3% |
| 3853866 | 558.1.1.14 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › HRI2_3H | 0.74 | 52.0 | 5.09e-01 | 74.6% | 68.6% |
| 4364892 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.74 | 66.0 | 4.27e-01 | 100.0% | 93.2% |
| 4682562 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.74 | 67.0 | 4.70e-01 | 100.0% | 55.1% |
| 4995195 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.73 | 60.0 | 4.06e-01 | 100.0% | 24.7% |
| 3596205 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 64.0 | 5.57e-01 | 100.0% | 69.5% |
| 5044325 | 4125.1.1.0 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like | 0.71 | 57.0 | 5.71e-01 | 90.5% | 86.2% |
| 3328865 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.71 | 63.0 | 6.09e-01 | 98.4% | 98.6% |
| 4394038 | 148.1.3.3 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red | 0.71 | 57.0 | 5.88e-01 | 98.4% | 93.3% |
| 3717011 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.71 | 55.0 | 3.98e-01 | 100.0% | 30.3% |
| 3800950 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.70 | 49.0 | 3.38e-01 | 74.6% | 37.7% |
| 4495994 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.69 | 59.0 | 3.88e-01 | 98.4% | 25.2% |
| 5060948 | 4957.1.1.9 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS | 0.66 | 55.0 | 5.26e-01 | 93.7% | 88.0% |
| 3951865 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.66 | 59.0 | 4.89e-01 | 100.0% | 61.8% |
| 4814 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.66 | 58.0 | 4.80e-01 | 100.0% | 60.2% |
| 3951200 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.65 | 58.0 | 5.05e-01 | 100.0% | 71.6% |
| 3406381 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.65 | 56.0 | 3.96e-01 | 100.0% | 32.4% |
| 3269012 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.65 | 51.0 | 3.32e-01 | 88.9% | 19.7% |
| 4120292 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 48.0 | 4.43e-01 | 79.4% | 70.0% |
| 4589278 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.64 | 57.0 | 4.83e-01 | 100.0% | 95.2% |
| 4034078 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.63 | 49.0 | 4.27e-01 | 85.7% | 75.0% |
| 3993765 | 627.1.1.0 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain | 0.62 | 42.0 | 3.91e-01 | 79.4% | 54.1% |
| 4220382 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.61 | 48.0 | 4.06e-01 | 87.3% | 69.1% |
| 4031187 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.61 | 53.0 | 5.07e-01 | 98.4% | 93.3% |
| 5055153 | 3290.1.1.0 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B | 0.61 | 42.0 | 3.96e-01 | 74.6% | 83.7% |
| 3594407 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 52.0 | 4.75e-01 | 100.0% | 76.5% |
| 3622208 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.59 | 42.0 | 3.59e-01 | 76.2% | 54.3% |
| 3719792 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.58 | 41.0 | 4.18e-01 | 77.8% | 73.3% |
| 3465214 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.57 | 47.0 | 4.49e-01 | 100.0% | 87.5% |
| 3955184 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.57 | 49.0 | 4.53e-01 | 100.0% | 80.0% |
| 4947266 | 7583.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom | 0.56 | 46.0 | 3.28e-01 | 96.8% | 28.6% |
| 4001318 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 41.0 | 3.89e-01 | 77.8% | 77.3% |
| 3243299 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 40.0 | 3.89e-01 | 77.8% | 74.3% |
| 3711247 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.54 | 44.0 | 2.80e-01 | 90.5% | 91.4% |
| 4242867 | 544.1.1.2 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › SRA1 | 0.54 | 46.0 | 3.78e-01 | 100.0% | 78.4% |
| 5032045 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.53 | 38.0 | 3.21e-01 | 74.6% | 56.0% |
| 3315663 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.52 | 45.0 | 3.05e-01 | 100.0% | 50.6% |
| 3545183 | 148.1.3.364 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28256 | 0.52 | 40.0 | 3.37e-01 | 88.9% | 46.7% |
| 4181805 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.50 | 34.0 | 3.25e-01 | 77.8% | 57.7% |
D3
high
residues 238-299
Domain cluster:
rep: OM418631.1__UNY42229.1__UFJFPfDIW6_00021__00021__D228-289
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.71 | 50.0 | 3.83e-01 | 74.2% | 38.6% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.61 | 34.0 | 3.18e-01 | 80.6% | 44.0% |
| 2arpF02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 31.0 | 2.95e-01 | 96.8% | 40.3% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 45.0 | 3.07e-01 | 90.3% | 75.1% |
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.55 | 42.0 | 3.08e-01 | 93.5% | 31.7% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 35.0 | 3.10e-01 | 74.2% | 56.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3444901 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.67 | 44.0 | 3.15e-01 | 100.0% | 24.0% |
| 4011910 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.61 | 42.0 | 2.91e-01 | 72.6% | 95.2% |
| 4922053 | 5093.1.1.4 ↗ | a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly, Fibritin_C | 0.58 | 39.0 | 2.35e-01 | 71.0% | 91.2% |
| 3213226 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.58 | 41.0 | 4.06e-01 | 74.2% | 86.2% |
| 3877696 | 101.1.2.164 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 | 0.57 | 37.0 | 3.20e-01 | 100.0% | 42.0% |
| 4059525 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.55 | 39.0 | 3.40e-01 | 74.2% | 54.7% |
| 3743175 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.55 | 44.0 | 3.31e-01 | 100.0% | 33.3% |
| 3749416 | 2007.15.1.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd | 0.55 | 43.0 | 2.81e-01 | 93.5% | 52.8% |
| 3351840 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.54 | 37.0 | 3.68e-01 | 74.2% | 78.3% |
| 3994831 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.53 | 43.0 | 2.79e-01 | 90.3% | 55.4% |
| 3468880 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 44.0 | 2.74e-01 | 93.5% | 25.6% |
| 3890428 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.51 | 42.0 | 3.09e-01 | 93.5% | 78.3% |