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MW862109.1__QVW29087.1__Medea1_0020__00020

Bact-Vir

MW862109.1__QVW29087.1__Medea1_0020__00020

Identity

Accession:
MW862109 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Medeavirus› Pseudomonas_phage_Medea1

TaxID: 2834256

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-103
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.56 40.0 3.43e-01 79.6% 54.7%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.15e-01 90.7% 63.4%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.52e-01 87.0% 100.0%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.51 36.0 3.21e-01 79.6% 77.5%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.51 36.0 2.77e-01 79.6% 80.0%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.51 38.0 2.96e-01 88.9% 74.3%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 36.0 2.64e-01 75.9% 31.2%
2lu1A00 3.30.70.2370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.10e-01 87.0% 46.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3335040 5.1.3.129 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX 0.68 40.0 4.02e-01 79.6% 56.4%
5011151 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 47.0 3.39e-01 88.9% 38.7%
3674852 2486.1.1.7 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 0.59 47.0 3.34e-01 98.1% 86.2%
3173890 3991.1.1.2 ↗ alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › RAB3A-like_C 0.57 41.0 2.85e-01 75.9% 32.0%
4483775 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.55 44.0 3.13e-01 100.0% 61.4%
3677873 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.55 45.0 3.12e-01 96.3% 75.1%
9228 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 41.0 2.71e-01 83.3% 23.3%
3198542 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 34.0 2.24e-01 79.6% 13.1%
4567966 109.4.1.2402 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF27648, PF30849 0.54 43.0 2.42e-01 100.0% 24.2%
4890942 2004.1.1.93 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynein_heavy 0.52 40.0 3.10e-01 90.7% 88.5%
1680274 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 35.0 3.05e-01 88.9% 39.4%
3942041 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.51 40.0 2.63e-01 100.0% 23.9%
3300837 873.1.1.10 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › D27-like_C 0.50 39.0 2.85e-01 90.7% 92.4%
D2 medium residues 123-204
PDB
Domain cluster: representative