←Back to structures
MW862109.1__QVW29101.1__Medea1_0034__00034
Bact-VirMW862109.1__QVW29101.1__Medea1_0034__00034
Identity
- Accession:
- MW862109 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
TaxID: 2834256
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-64
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 52.0 | 5.19e-01 | 70.0% | 62.7% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.82 | 56.0 | 4.60e-01 | 72.0% | 41.9% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.78 | 52.0 | 5.44e-01 | 74.0% | 74.5% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 58.0 | 4.43e-01 | 82.0% | 36.0% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.74 | 61.0 | 3.59e-01 | 92.0% | 11.9% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 53.0 | 3.72e-01 | 78.0% | 93.5% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.70 | 48.0 | 3.06e-01 | 92.0% | 13.5% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 51.0 | 3.54e-01 | 76.0% | 91.6% |
| 1nvpB00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 51.0 | 5.39e-01 | 82.0% | 93.0% |
| 1nh2B00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 52.0 | 5.42e-01 | 84.0% | 95.7% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 51.0 | 3.97e-01 | 86.0% | 35.7% |
| 1z7mC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.68 | 50.0 | 3.12e-01 | 92.0% | 13.6% |
| 1lvaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 43.0 | 4.05e-01 | 72.0% | 53.2% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 3.94e-01 | 76.0% | 54.0% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.65 | 45.0 | 4.73e-01 | 80.0% | 82.2% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.63 | 54.0 | 3.40e-01 | 100.0% | 49.2% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.62 | 46.0 | 3.41e-01 | 94.0% | 29.7% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.62 | 43.0 | 3.68e-01 | 76.0% | 44.4% |
| 2pmyA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 44.0 | 3.96e-01 | 76.0% | 63.0% |
| 4ga4A02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.59 | 49.0 | 3.10e-01 | 94.0% | 48.7% |
| 6o9aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 43.0 | 3.25e-01 | 100.0% | 35.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4935885 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.80 | 56.0 | 3.34e-01 | 76.0% | 11.0% |
| 3575095 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.78 | 57.0 | 5.20e-01 | 78.0% | 61.5% |
| 3293917 | 616.1.1.28 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › RNA_pol_Rpb1_1 | 0.77 | 57.0 | 4.20e-01 | 78.0% | 43.3% |
| 3403179 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.75 | 55.0 | 4.27e-01 | 78.0% | 38.1% |
| 4020233 | 101.42.1.0 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins | 0.70 | 57.0 | 5.56e-01 | 96.0% | 83.6% |
| 4953534 | 3826.1.1.1 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal | 0.65 | 54.0 | 4.54e-01 | 92.0% | 55.3% |