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MW862981.1__QWY81870.1__SEA_HONK_47__00047

Bact-Vir

MW862981.1__QWY81870.1__SEA_HONK_47__00047

Identity

Accession:
MW862981 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Honkvirus› Microbacterium_phage_Honk

TaxID: 2836095

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 178-302
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 30.1 5.90e-07 34.4% 66.0%
D2 medium residues 1-66
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.72 44.0 5.09e-01 95.5% 87.2%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 43.0 4.86e-01 84.8% 90.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.59 33.0 3.53e-01 80.3% 62.5%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 39.0 4.45e-01 84.8% 97.9%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 45.0 3.53e-01 89.4% 51.0%
5sviB00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.55 37.0 4.01e-01 78.8% 84.9%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.55 41.0 3.87e-01 81.8% 95.2%
1nqlB00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.53 28.0 3.20e-01 77.3% 68.8%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 41.0 2.74e-01 89.4% 75.5%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 40.0 3.40e-01 86.4% 78.8%
2psmC01 2.20.28.230 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 30.0 3.31e-01 75.8% 71.2%
7jptA01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 40.0 3.32e-01 86.4% 48.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838150 375.1.1.59 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin_2 0.71 40.0 4.63e-01 71.2% 80.0%
3188296 375.1.1.132 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOB1_Zn_bind 0.58 41.0 4.28e-01 92.4% 81.7%
4028836 375.5.1.1 ↗ few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.58 41.0 4.16e-01 74.2% 75.4%
3733469 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 32.0 2.53e-01 78.8% 23.4%
4055012 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.55 42.0 4.24e-01 84.8% 83.1%
3703176 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.55 32.0 3.74e-01 87.9% 86.4%
3931978 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.55 29.0 3.32e-01 77.3% 68.8%
3469808 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.44e-01 84.8% 95.0%
3702274 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.51 39.0 4.07e-01 90.9% 95.0%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 31.0 3.21e-01 84.8% 65.0%
3422527 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.50 36.0 3.04e-01 75.8% 74.8%
D3 medium residues 67-124
PDB