Back to structures

MW862981.1__QWY81878.1__SEA_HONK_55__00055

Bact-Vir

MW862981.1__QWY81878.1__SEA_HONK_55__00055

Identity

Accession:
MW862981 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.76 54.0 4.41e-01 85.9% 41.0%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.73 57.0 4.61e-01 84.4% 78.5%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.71 53.0 4.42e-01 90.6% 46.4%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.68 54.0 4.98e-01 100.0% 68.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 52.0 3.88e-01 84.4% 95.8%
3uv0B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.66 58.0 5.01e-01 98.4% 99.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 50.0 4.49e-01 82.8% 98.9%
3opyB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 49.0 3.85e-01 90.6% 38.5%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 42.0 3.69e-01 100.0% 43.1%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 56.0 4.68e-01 100.0% 75.0%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.61 47.0 3.97e-01 84.4% 81.8%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 43.0 3.90e-01 87.5% 53.9%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 52.0 4.73e-01 96.9% 94.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.37e-01 96.9% 75.0%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.60 43.0 3.38e-01 100.0% 36.1%
1zswA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 51.0 3.77e-01 98.4% 69.1%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.71e-01 100.0% 51.6%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 48.0 4.09e-01 95.3% 100.0%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.73e-01 100.0% 51.5%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 50.0 3.68e-01 100.0% 84.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 3.95e-01 100.0% 75.0%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.08e-01 100.0% 74.8%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 48.0 4.73e-01 95.3% 100.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 4.10e-01 100.0% 95.5%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.28e-01 100.0% 79.0%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.12e-01 100.0% 84.7%
2nrkA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 46.0 3.60e-01 100.0% 46.1%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.06e-01 100.0% 63.2%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.09e-01 96.9% 100.0%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.56 39.0 3.30e-01 76.6% 88.4%
2fiuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.24e-01 100.0% 95.8%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.56 49.0 4.09e-01 100.0% 77.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.20e-01 100.0% 75.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.76e-01 100.0% 90.6%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 3.49e-01 75.0% 85.4%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.03e-01 100.0% 75.0%
3t37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 3.16e-01 98.4% 57.7%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.52e-01 87.5% 99.1%
3uqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 3.41e-01 76.6% 83.9%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.44e-01 82.8% 68.9%
4mbrA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.33e-01 90.6% 92.7%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 37.0 3.54e-01 93.8% 63.5%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.85e-01 100.0% 81.7%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.86e-01 100.0% 71.8%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.52 38.0 2.83e-01 78.1% 98.2%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.87e-01 98.4% 80.8%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.31e-01 95.3% 69.2%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.68e-01 100.0% 66.1%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.92e-01 100.0% 94.7%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.57e-01 100.0% 69.6%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 39.0 2.67e-01 95.3% 66.1%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.50 41.0 3.01e-01 100.0% 50.2%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.60e-01 85.9% 85.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3178087 331.9.1.1 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.80 66.0 5.12e-01 89.1% 54.8%
4054953 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.75 57.0 4.55e-01 82.8% 54.6%
5008037 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.72 54.0 4.30e-01 79.7% 93.6%
3566394 4099.1.1.8 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF4581 0.67 47.0 4.08e-01 100.0% 48.0%
4935701 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 51.0 3.27e-01 89.1% 28.9%
3169646 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 42.0 3.79e-01 71.9% 49.5%
1160734 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.61 43.0 4.22e-01 89.1% 67.1%
3250470 3307.1.1.0 a+b two layers › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 0.61 52.0 4.73e-01 100.0% 94.4%
3592949 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 43.0 4.35e-01 89.1% 75.4%
3744424 312.1.1.6 a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.60 46.0 3.31e-01 85.9% 36.3%
3861538 220.1.1.118 beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.60 52.0 4.27e-01 100.0% 65.6%
4564280 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 45.0 3.23e-01 85.9% 83.3%
4018289 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 42.0 3.38e-01 79.7% 95.2%
3882269 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.59 52.0 4.41e-01 100.0% 80.0%
3557363 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.05e-01 100.0% 58.5%
5079456 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.58 47.0 3.45e-01 90.6% 38.3%
5028044 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 40.0 3.32e-01 73.4% 97.6%
3906179 4099.1.1.9 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 0.58 42.0 3.23e-01 98.4% 32.9%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.57 51.0 4.42e-01 100.0% 72.0%
4022821 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 3.78e-01 100.0% 49.7%
3883554 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 49.0 4.15e-01 100.0% 64.3%
2323730 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.57 49.0 4.03e-01 100.0% 96.8%
4225185 220.1.1.154 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.57 50.0 3.72e-01 100.0% 55.3%
3732704 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.57 50.0 3.04e-01 100.0% 94.5%
3483819 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 49.0 3.79e-01 100.0% 72.0%
3265308 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 3.72e-01 100.0% 59.4%
3505384 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 40.0 2.61e-01 76.6% 18.8%
3218911 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 3.86e-01 100.0% 61.5%
4136386 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 3.03e-01 78.1% 56.5%
3628059 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 3.90e-01 100.0% 66.4%
5079209 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.68e-01 100.0% 49.0%
3476418 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 3.76e-01 100.0% 73.3%
5046375 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.54 46.0 4.31e-01 98.4% 98.8%
3315163 3125.1.1.1 alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.54 47.0 4.55e-01 100.0% 100.0%
3257630 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.77e-01 100.0% 61.5%
3503857 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 3.97e-01 100.0% 69.1%
3953652 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.54 40.0 4.02e-01 84.4% 89.2%
3225003 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.84e-01 100.0% 70.0%
5075225 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.89e-01 100.0% 64.7%
3249359 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.78e-01 100.0% 62.4%
3171605 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.32e-01 100.0% 53.3%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 36.0 2.48e-01 71.9% 38.0%
3750304 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.78e-01 100.0% 72.5%
3273672 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 3.56e-01 100.0% 51.3%
3939988 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.72e-01 100.0% 62.4%
4011110 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.68e-01 100.0% 66.2%
3270411 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.80e-01 100.0% 65.2%
4955898 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.53 47.0 3.92e-01 100.0% 59.1%
3389075 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.81e-01 100.0% 70.4%
3273591 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 3.70e-01 100.0% 50.8%
3260650 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 3.82e-01 100.0% 66.4%
4953154 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 46.0 3.89e-01 100.0% 96.4%
161571 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 41.0 2.75e-01 92.2% 65.6%
3896251 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.74e-01 100.0% 65.8%
4081824 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 44.0 3.14e-01 100.0% 87.4%
4947339 5103.1.1.0 a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.52 43.0 3.78e-01 98.4% 61.0%
3819113 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 44.0 2.93e-01 100.0% 25.5%
3913593 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.58e-01 100.0% 62.4%
5054505 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 43.0 3.95e-01 100.0% 94.4%
3721847 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.51 44.0 2.60e-01 100.0% 99.3%
3604468 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 4.03e-01 100.0% 81.2%
5000446 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 44.0 4.00e-01 100.0% 93.3%
4965483 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.50 43.0 2.73e-01 100.0% 90.1%