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MW862992.1__QWY82805.1__SEA_SILENTRX_65__00065

Bact-Vir

MW862992.1__QWY82805.1__SEA_SILENTRX_65__00065

Identity

Accession:
MW862992 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 85-148
PDB
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.71 63.0 5.75e-01 100.0% 100.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.69 59.0 4.30e-01 100.0% 36.7%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.42e-01 96.9% 71.1%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.67 57.0 4.45e-01 100.0% 87.3%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 53.0 4.26e-01 100.0% 43.5%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.67 58.0 4.97e-01 100.0% 87.9%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 50.0 4.10e-01 100.0% 42.4%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 54.0 4.12e-01 89.1% 71.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 46.0 2.79e-01 75.0% 17.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 54.0 4.70e-01 93.8% 62.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.65 53.0 4.88e-01 93.8% 97.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 54.0 4.65e-01 93.8% 61.5%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 49.0 3.91e-01 100.0% 39.0%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 54.0 3.48e-01 100.0% 91.6%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 45.0 3.81e-01 98.4% 43.4%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 53.0 3.98e-01 100.0% 77.8%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 54.0 3.94e-01 100.0% 82.7%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.62 43.0 3.52e-01 100.0% 39.2%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 52.0 3.70e-01 100.0% 45.7%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.50e-01 98.4% 88.0%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 51.0 3.83e-01 100.0% 87.0%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.25e-01 98.4% 88.3%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 52.0 3.58e-01 100.0% 67.5%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 52.0 4.10e-01 100.0% 96.3%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.26e-01 98.4% 82.6%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 50.0 3.27e-01 100.0% 88.6%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 48.0 4.37e-01 100.0% 66.3%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.63e-01 100.0% 50.8%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.58 48.0 3.66e-01 100.0% 87.9%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 49.0 3.69e-01 100.0% 86.9%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.13e-01 98.4% 77.8%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.58 43.0 3.59e-01 100.0% 45.5%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.58 49.0 4.40e-01 100.0% 82.1%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 47.0 3.92e-01 100.0% 59.7%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.37e-01 93.8% 36.6%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 38.0 3.12e-01 73.4% 90.4%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 45.0 3.76e-01 93.8% 66.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.87e-01 96.9% 68.5%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.06e-01 76.6% 76.8%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.42e-01 100.0% 48.6%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 44.0 3.58e-01 98.4% 61.7%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 44.0 3.61e-01 98.4% 62.5%
2jkbA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.34e-01 100.0% 76.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 45.0 4.22e-01 96.9% 91.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.78e-01 98.4% 72.5%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 36.0 2.92e-01 73.4% 74.6%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 38.0 3.06e-01 100.0% 36.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 36.0 3.90e-01 96.9% 95.8%
2n6eA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.52 43.0 3.75e-01 100.0% 69.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.65e-01 96.9% 75.0%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 43.0 3.25e-01 100.0% 67.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 41.0 3.38e-01 100.0% 46.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 35.0 3.76e-01 98.4% 92.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 4.00e-01 95.3% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.78e-01 95.3% 78.8%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.55e-01 95.3% 62.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 43.0 4.34e-01 100.0% 95.5%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 42.0 3.36e-01 98.4% 65.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498264 219.1.1.53 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.74 65.0 4.36e-01 100.0% 30.6%
3926830 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.73 57.0 4.85e-01 87.5% 60.9%
3266788 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.69 60.0 4.87e-01 100.0% 60.5%
4028717 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.68 57.0 3.98e-01 100.0% 28.8%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.68 60.0 4.55e-01 100.0% 98.1%
4583705 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 52.0 3.44e-01 100.0% 18.6%
2570822 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 53.0 4.08e-01 100.0% 37.9%
3898586 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.68 50.0 3.05e-01 81.2% 17.8%
3203375 219.1.1.129 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.67 59.0 4.71e-01 100.0% 49.2%
3265309 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.66 56.0 4.42e-01 100.0% 61.1%
141833 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.66 54.0 4.96e-01 93.8% 98.8%
3917456 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.64 48.0 2.94e-01 81.2% 26.8%
4041829 219.1.1.21 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.64 54.0 3.80e-01 100.0% 31.1%
3801806 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.64 55.0 4.65e-01 100.0% 100.0%
4018596 4.1.1.320 beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.64 47.0 4.15e-01 100.0% 52.0%
3900017 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.64 52.0 4.26e-01 100.0% 48.3%
4959592 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 56.0 4.35e-01 98.4% 50.7%
3483435 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.63 55.0 4.05e-01 100.0% 47.8%
3516909 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 53.0 3.98e-01 100.0% 54.9%
3385461 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 51.0 4.03e-01 100.0% 41.4%
3897826 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.62 53.0 4.42e-01 98.4% 73.9%
3239831 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 51.0 4.10e-01 98.4% 51.4%
3706577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 53.0 4.23e-01 98.4% 84.6%
3486509 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.34e-01 98.4% 85.2%
3507883 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 51.0 4.31e-01 98.4% 78.3%
3392702 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 47.0 3.28e-01 98.4% 25.6%
3709314 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.26e-01 100.0% 79.2%
3255850 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 51.0 4.01e-01 98.4% 67.1%
4976853 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.59 51.0 4.21e-01 100.0% 75.0%
3532104 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.59 51.0 3.44e-01 100.0% 26.7%
3480050 5.1.4.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD_LRWD1 0.59 52.0 3.12e-01 100.0% 66.1%
4055106 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.59 49.0 3.67e-01 100.0% 77.8%
3270494 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 4.03e-01 98.4% 80.7%
3807010 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 49.0 3.92e-01 100.0% 65.0%
4253206 4.1.1.127 beta barrels › SH3 › SH3 › SH3 › DtxR 0.58 50.0 4.46e-01 96.9% 80.0%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 48.0 3.80e-01 95.3% 95.0%
3342304 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.74e-01 98.4% 61.3%
3597224 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.96e-01 98.4% 73.6%
3236014 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 48.0 3.14e-01 100.0% 92.0%
3587744 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.57 48.0 3.84e-01 98.4% 75.0%
4949848 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.57 41.0 4.30e-01 100.0% 89.1%
4302902 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.57 48.0 3.95e-01 100.0% 92.3%
3299797 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.57 40.0 4.10e-01 98.4% 80.0%
3417150 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 3.68e-01 100.0% 61.2%
3270288 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 49.0 4.24e-01 98.4% 85.0%
3673317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.29e-01 95.3% 90.9%
3620554 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.31e-01 100.0% 68.4%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 38.0 3.73e-01 95.3% 64.8%
3938589 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 38.0 4.05e-01 95.3% 92.0%
3817476 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 39.0 4.21e-01 93.8% 98.0%
3390155 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.54 42.0 3.92e-01 95.3% 64.7%
4038568 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.54 45.0 3.37e-01 100.0% 83.2%
4608534 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.54 44.0 2.95e-01 100.0% 34.2%
3546607 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 36.0 3.90e-01 96.9% 92.0%
3420348 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.54 38.0 4.03e-01 93.8% 89.1%
140210 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.78e-01 98.4% 72.5%
3998022 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 36.0 3.83e-01 95.3% 85.5%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.52 37.0 3.87e-01 96.9% 85.0%
1145920 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 36.0 3.38e-01 95.3% 59.0%
3709029 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.82e-01 96.9% 86.7%
2137682 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.50 40.0 3.53e-01 98.4% 56.9%