Back to structures

MW865340.1__QZI86689.1__SIPHO036v1_140016__00016

Bact-Vir

MW865340.1__QZI86689.1__SIPHO036v1_140016__00016

Identity

Accession:
MW865340 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-124
PDB
D2 high residues 142-187
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a1xA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.69 57.0 3.54e-01 91.3% 85.8%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 53.0 3.32e-01 100.0% 15.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 42.0 3.53e-01 76.1% 34.5%
3safB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 51.0 3.20e-01 100.0% 15.0%
1d8yA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 50.0 3.29e-01 100.0% 18.9%
7jw6A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 50.0 3.26e-01 100.0% 19.1%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 50.0 3.29e-01 100.0% 19.5%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 49.0 3.36e-01 100.0% 21.6%
7l1rG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.63 49.0 3.19e-01 89.1% 41.0%
1vk0A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 51.0 3.45e-01 100.0% 23.5%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 53.0 3.67e-01 100.0% 34.9%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 51.0 3.14e-01 93.5% 95.9%
5awwY00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.60 52.0 3.04e-01 100.0% 46.9%
3moiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 46.0 3.16e-01 93.5% 87.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 43.0 3.10e-01 78.3% 92.1%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.59 50.0 3.46e-01 95.7% 100.0%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 4.05e-01 100.0% 58.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 51.0 3.09e-01 100.0% 57.7%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.58 46.0 3.35e-01 93.5% 31.5%
1rh5A00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.58 44.0 2.57e-01 84.8% 22.9%
2bf1A00 2.170.40.20 Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein 0.58 48.0 2.97e-01 100.0% 91.4%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 50.0 3.03e-01 100.0% 63.1%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 46.0 3.20e-01 89.1% 96.6%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 43.0 3.01e-01 84.8% 29.4%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.56 44.0 3.07e-01 97.8% 25.8%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 3.54e-01 93.5% 87.4%
1a3wA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.56 47.0 3.36e-01 100.0% 78.1%
3ogzA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 2.59e-01 97.8% 9.2%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 39.0 2.45e-01 76.1% 25.0%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 45.0 3.77e-01 93.5% 83.5%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.11e-01 95.7% 26.9%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 49.0 3.39e-01 97.8% 85.8%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 41.0 3.06e-01 84.8% 32.6%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 44.0 2.76e-01 89.1% 83.1%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.31e-01 100.0% 91.2%
4kg8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.33e-01 100.0% 88.4%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 44.0 3.54e-01 100.0% 61.8%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.35e-01 91.3% 46.1%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 45.0 3.57e-01 100.0% 50.5%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 46.0 3.42e-01 100.0% 40.7%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.46e-01 91.3% 54.1%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 44.0 3.02e-01 97.8% 57.2%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.39e-01 97.8% 46.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943661 304.5.1.13 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.75 41.0 3.17e-01 100.0% 25.0%
4315272 3281.1.1.3 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.70 52.0 2.87e-01 80.4% 32.1%
1187764 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.68 54.0 3.35e-01 100.0% 15.6%
3597257 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 4.52e-01 97.8% 51.2%
4538612 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.67 53.0 3.14e-01 97.8% 11.0%
4047429 3281.1.1.3 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.67 51.0 2.85e-01 84.8% 33.4%
4299747 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.66 51.0 2.88e-01 84.8% 78.1%
3993770 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.66 51.0 3.21e-01 100.0% 15.0%
4983889 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.66 47.0 3.53e-01 84.8% 31.8%
3185973 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.65 51.0 3.16e-01 100.0% 14.8%
4272772 3281.1.1.3 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.65 51.0 2.80e-01 84.8% 31.6%
4333172 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.65 51.0 3.41e-01 100.0% 21.0%
1756776 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.65 50.0 3.12e-01 100.0% 14.2%
4233346 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 49.0 3.04e-01 100.0% 12.7%
4611946 3281.1.1.4 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,NADH5_C 0.63 47.0 2.66e-01 84.8% 71.6%
3821254 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.63 48.0 3.67e-01 100.0% 32.8%
3983446 101.1.2.84 alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA 0.62 48.0 3.94e-01 97.8% 43.0%
5035757 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.62 52.0 4.09e-01 100.0% 58.1%
5033074 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.62 49.0 3.68e-01 100.0% 36.4%
3219623 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.61 42.0 2.56e-01 73.9% 24.3%
4001646 206.1.3.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.61 45.0 3.14e-01 82.6% 26.9%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.61 52.0 3.40e-01 97.8% 23.9%
3163747 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 2.77e-01 100.0% 8.6%
3404546 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.59 49.0 3.55e-01 100.0% 81.3%
4953135 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 46.0 3.19e-01 84.8% 50.3%
3553058 605.3.1.0 alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.58 44.0 3.15e-01 82.6% 67.9%
4564040 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 46.0 3.29e-01 87.0% 93.3%
4184526 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.58 50.0 3.77e-01 100.0% 96.7%
3170588 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.57 50.0 3.07e-01 100.0% 59.3%
5056705 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.57 46.0 4.02e-01 100.0% 96.2%
4954734 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.57 48.0 3.64e-01 100.0% 95.0%
3211111 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.56 46.0 2.68e-01 89.1% 28.5%
2390064 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.56 41.0 2.71e-01 78.3% 66.8%
3506312 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 41.0 2.91e-01 78.3% 39.3%
4028930 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.56 49.0 3.04e-01 100.0% 62.9%
2553360 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.56 46.0 3.44e-01 100.0% 89.1%
5053278 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.56 50.0 2.91e-01 97.8% 27.6%
5069398 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.56 47.0 3.58e-01 100.0% 96.7%
3225873 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.55 40.0 2.43e-01 84.8% 55.4%
3365773 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 46.0 2.86e-01 100.0% 60.7%
4309637 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.55 45.0 3.82e-01 97.8% 69.0%
5030935 2008.1.1.39 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-BglII 0.54 46.0 3.04e-01 93.5% 36.1%
4024452 2011.1.1.21 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.54 46.0 2.90e-01 100.0% 60.0%
4014453 2498.2.1.0 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.53 47.0 3.06e-01 100.0% 67.3%
5009974 2487.1.1.9 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.53 42.0 3.38e-01 100.0% 100.0%
3415655 2492.1.1.4 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 39.0 2.49e-01 100.0% 13.1%
4932518 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 43.0 3.56e-01 100.0% 50.5%
3195333 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 46.0 3.30e-01 100.0% 35.6%
3684167 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 42.0 2.81e-01 87.0% 28.5%
3990064 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.51 46.0 3.06e-01 100.0% 29.1%
4243267 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 40.0 2.62e-01 95.7% 18.0%
3997337 2.1.1.68 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C 0.51 39.0 3.26e-01 87.0% 76.5%
3447934 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.51 44.0 3.42e-01 97.8% 52.0%
3600809 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.51 43.0 2.93e-01 95.7% 26.1%
4954449 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.51 42.0 3.24e-01 91.3% 87.9%
3683785 2004.11.1.1 a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP 0.51 46.0 3.17e-01 100.0% 70.3%
3325376 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.50 40.0 3.65e-01 97.8% 98.6%