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MW865361.1__QZI86742.1__SIPHO019v1_200001__00001
Bact-VirMW865361.1__QZI86742.1__SIPHO019v1_200001__00001
Identity
- Accession:
- MW865361 ↗
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-189
Domain cluster:
rep: OQ414636.1__WDQ27620.1__EXVC031PHodr_039__00039__D9-186
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 32.0 | 4.58e-01 | 87.4% | 97.6% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.63 | 32.0 | 4.33e-01 | 88.0% | 96.6% |
| 2ywwA01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.62 | 31.0 | 4.16e-01 | 76.0% | 92.3% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 40.0 | 4.42e-01 | 93.4% | 89.7% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 37.0 | 4.24e-01 | 94.0% | 89.1% |
| 3fgvA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 29.0 | 3.82e-01 | 85.8% | 95.7% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 27.0 | 3.17e-01 | 85.2% | 65.6% |
| 5eokA03 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.54 | 25.0 | 3.33e-01 | 80.3% | 80.4% |
| 4ch7A02 | 3.30.70.3460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 4.08e-01 | 84.2% | 82.8% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.51 | 34.0 | 3.58e-01 | 79.8% | 74.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031372 | 862.1.1.12 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 | 0.79 | 75.0 | 7.28e-01 | 100.0% | 91.5% |
| 4635441 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.72 | 37.0 | 5.05e-01 | 86.9% | 95.8% |
| 3927592 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 37.0 | 4.37e-01 | 85.8% | 75.4% |
| 3958239 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 31.0 | 4.55e-01 | 83.6% | 100.0% |
| 3938988 | 304.9.1.78 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28978 | 0.66 | 33.0 | 4.66e-01 | 88.5% | 98.9% |
| 4483977 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.66 | 36.0 | 4.72e-01 | 76.0% | 97.0% |
| 3600648 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 36.0 | 4.34e-01 | 82.5% | 84.2% |
| 3233980 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 33.0 | 4.45e-01 | 88.5% | 100.0% |
| 4948226 | 304.38.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI_C | 0.61 | 31.0 | 4.15e-01 | 73.2% | 91.6% |
| 4179054 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 35.0 | 3.98e-01 | 89.6% | 73.6% |
| 4486890 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.61 | 34.0 | 4.25e-01 | 91.3% | 90.0% |
| 4656922 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 36.0 | 4.33e-01 | 87.4% | 90.0% |
| 3520543 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 31.0 | 4.16e-01 | 72.7% | 100.0% |
| 4024675 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.57 | 35.0 | 3.96e-01 | 80.3% | 80.0% |
| 5078835 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.55 | 39.0 | 3.53e-01 | 71.0% | 67.1% |
| 4682347 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 39.0 | 3.40e-01 | 71.6% | 60.4% |
| 4407903 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 38.0 | 3.38e-01 | 71.6% | 60.4% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.53 | 43.0 | 4.11e-01 | 84.7% | 92.4% |
| 3716731 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 33.0 | 3.75e-01 | 91.8% | 82.9% |
D2
high
residues 233-343
Domain cluster:
rep: MT121967.1__QIW90016.1__X__00007__D266-351
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.69 | 54.0 | 5.61e-01 | 94.6% | 91.2% |
| 1vkwA02 | 3.40.109.30 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 | 0.56 | 31.0 | 3.35e-01 | 74.8% | 61.5% |
| 2kb3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 39.0 | 3.81e-01 | 79.3% | 86.7% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 21.0 | 3.15e-01 | 88.3% | 100.0% |
| 2a1vA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 37.0 | 3.49e-01 | 77.5% | 99.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3992485 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.58 | 32.0 | 2.29e-01 | 92.8% | 17.8% |
| 4505497 | 103.5.1.1 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › PYC_OADA | 0.57 | 22.0 | 2.77e-01 | 89.2% | 55.4% |
| 5028134 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.55 | 36.0 | 4.28e-01 | 96.4% | 93.8% |
| 5024247 | 210.1.1.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd | 0.50 | 39.0 | 3.30e-01 | 84.7% | 80.3% |