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MW879341.1__QXO11135.1__pEaSNUABM54_00309__00309

Bact-Vir

MW879341.1__QXO11135.1__pEaSNUABM54_00309__00309

Identity

Accession:
MW879341 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-91
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mi7A03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.71 64.0 4.42e-01 97.6% 34.1%
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 54.0 4.31e-01 97.6% 40.5%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.71 63.0 6.14e-01 96.4% 91.1%
6vw7B03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.69 52.0 5.25e-01 94.0% 78.6%
3ibvB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 60.0 3.38e-01 97.6% 8.8%
1hciA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 60.0 5.20e-01 95.2% 81.7%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 59.0 5.84e-01 96.4% 93.2%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 57.0 5.70e-01 95.2% 89.7%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.68 59.0 5.19e-01 98.8% 87.5%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 57.0 5.27e-01 92.8% 74.5%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 57.0 4.42e-01 95.2% 52.7%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 5.24e-01 90.4% 89.1%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.66 55.0 5.38e-01 96.4% 85.4%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.65 43.0 4.94e-01 91.6% 100.0%
4e12A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 44.0 3.39e-01 91.6% 30.6%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 56.0 3.89e-01 96.4% 28.9%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 4.85e-01 95.2% 90.8%
1o2dA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.64 55.0 4.27e-01 94.0% 64.8%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.64 53.0 4.02e-01 91.6% 58.3%
1f59A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 55.0 3.47e-01 96.4% 26.1%
1rrmA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.64 56.0 4.21e-01 96.4% 59.0%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 48.0 4.04e-01 96.4% 47.5%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.63 53.0 5.15e-01 90.4% 89.1%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.63 54.0 4.91e-01 91.6% 84.0%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 52.0 4.26e-01 98.8% 48.7%
6c7lA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 55.0 4.17e-01 97.6% 61.5%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 55.0 4.67e-01 98.8% 73.5%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.62 56.0 4.32e-01 100.0% 55.8%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 56.0 4.09e-01 98.8% 41.4%
2wwwC01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 37.0 4.50e-01 80.7% 98.1%
1e6bA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 52.0 4.69e-01 100.0% 69.4%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 42.0 3.51e-01 71.1% 92.4%
3qbmB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 53.0 4.06e-01 100.0% 66.0%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 49.0 5.12e-01 98.8% 100.0%
3f0cA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 50.0 4.31e-01 100.0% 96.5%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 4.01e-01 96.4% 61.7%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.58 46.0 4.16e-01 94.0% 61.1%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.55 46.0 3.72e-01 96.4% 48.7%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 45.0 4.39e-01 94.0% 83.3%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 37.0 3.72e-01 96.4% 70.1%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.53 40.0 3.96e-01 83.1% 75.3%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 48.0 3.84e-01 100.0% 61.8%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 43.0 3.23e-01 94.0% 78.5%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 45.0 3.86e-01 100.0% 62.1%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.51 37.0 2.98e-01 75.9% 51.5%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 45.0 4.03e-01 98.8% 76.9%
4pneA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.03e-01 95.2% 88.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602498 604.17.1.1 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.81 56.0 6.53e-01 88.0% 100.0%
3716393 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 54.0 3.53e-01 92.8% 18.8%
3650927 109.4.1.170 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.71 56.0 4.33e-01 96.4% 39.4%
1007485 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.71 63.0 6.14e-01 96.4% 91.1%
3333216 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.71 62.0 5.95e-01 96.4% 86.3%
3505507 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.70 56.0 6.01e-01 94.0% 100.0%
3704321 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 57.0 5.65e-01 96.4% 85.9%
3806947 109.4.1.447 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N 0.69 61.0 3.63e-01 100.0% 24.5%
5032064 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.69 57.0 5.81e-01 95.2% 93.7%
4618646 109.4.1.177 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 0.68 56.0 3.53e-01 91.6% 30.1%
4945502 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.68 58.0 4.33e-01 97.6% 61.4%
3246252 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 52.0 3.94e-01 94.0% 33.3%
3701328 109.4.1.1362 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C 0.67 61.0 5.20e-01 100.0% 72.3%
3256854 2006.1.1.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.67 52.0 3.43e-01 81.9% 32.5%
4398486 109.4.1.451 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.66 55.0 3.57e-01 91.6% 40.3%
3192032 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.66 59.0 4.86e-01 100.0% 66.7%
3662533 603.1.1.138 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › BPS1 0.66 57.0 5.56e-01 95.2% 100.0%
4003763 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 51.0 4.07e-01 98.8% 40.6%
3483996 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 57.0 5.23e-01 98.8% 91.8%
3789416 109.4.1.463 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF1765 0.65 56.0 3.81e-01 100.0% 25.7%
3684480 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 54.0 4.87e-01 100.0% 67.0%
4019009 109.4.1.777 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 50.0 4.30e-01 98.8% 53.8%
3412004 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 54.0 5.09e-01 95.2% 89.0%
3406372 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.63 45.0 3.40e-01 96.4% 30.2%
4426080 109.4.1.934 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.63 46.0 4.19e-01 92.8% 58.2%
3605713 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 53.0 5.29e-01 98.8% 94.1%
3235514 601.33.1.10 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › DUF19 0.62 47.0 4.99e-01 96.4% 95.7%
3515738 109.4.1.643 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG2_C 0.62 52.0 3.21e-01 97.6% 25.7%
3171862 109.4.1.451 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.62 53.0 3.73e-01 97.6% 44.3%
4017646 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 3.43e-01 100.0% 26.9%
3382312 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.60 51.0 3.55e-01 100.0% 27.9%
3166693 109.1.1.4 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › MetRS-N 0.60 44.0 4.23e-01 96.4% 66.0%
3612932 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 52.0 3.88e-01 98.8% 45.5%
3995328 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 3.94e-01 96.4% 42.1%
3242442 109.4.1.1141 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF19 0.58 47.0 3.92e-01 97.6% 48.4%
4981587 3930.1.1.0 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.58 44.0 3.88e-01 98.8% 53.1%
3221474 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.58 50.0 3.75e-01 98.8% 73.0%
3356202 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 51.0 3.44e-01 100.0% 28.7%
3612725 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 43.0 4.36e-01 91.6% 80.0%
3467280 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 49.0 3.06e-01 100.0% 16.7%
3704748 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 46.0 4.85e-01 94.0% 100.0%
3805266 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.56 48.0 2.79e-01 95.2% 48.5%
None 0.55 48.0 3.19e-01 100.0% 24.7%
None 0.53 46.0 3.14e-01 100.0% 26.6%
417755 3220.1.1.1 alpha complex topology › ISWI one complex protein 3 › ISWI one complex protein 3 › ISWI one complex protein 3 › WHIM1 0.52 40.0 2.44e-01 84.3% 26.2%
D2 medium residues 92-155
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.78 69.0 5.52e-01 96.9% 72.1%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.70 54.0 4.85e-01 82.8% 83.5%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 50.0 4.55e-01 85.9% 83.5%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 52.0 4.15e-01 92.2% 81.9%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 38.0 3.85e-01 75.0% 94.0%
1of9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.51 38.0 3.73e-01 87.5% 79.2%
2np3A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 42.0 3.41e-01 98.4% 99.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3750000 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 57.0 4.92e-01 92.2% 91.4%
4447482 2484.1.1.11 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.56 45.0 3.71e-01 89.1% 94.2%