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MW900438.1__QVJ07721.1__S1R3Y_000012__00012

Bact-Vir

MW900438.1__QVJ07721.1__S1R3Y_000012__00012

Identity

Accession:
MW900438 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-80
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 49.0 4.27e-01 72.0% 51.4%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 51.0 4.43e-01 77.3% 88.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 52.0 4.05e-01 81.3% 92.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.69 48.0 4.39e-01 72.0% 61.5%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.69 47.0 4.31e-01 70.7% 60.2%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 44.0 4.34e-01 81.3% 62.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.68 53.0 5.19e-01 84.0% 86.6%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.68 51.0 4.37e-01 81.3% 62.6%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.67 53.0 4.83e-01 85.3% 84.0%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 47.0 4.40e-01 81.3% 58.9%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 4.50e-01 81.3% 68.9%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.66 49.0 4.41e-01 81.3% 60.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 49.0 4.63e-01 81.3% 94.6%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 47.0 4.06e-01 77.3% 83.5%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 45.0 3.88e-01 72.0% 56.3%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 50.0 4.83e-01 84.0% 90.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.64 48.0 4.48e-01 81.3% 92.6%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 49.0 4.27e-01 84.0% 94.9%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 53.0 4.24e-01 93.3% 80.9%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.62 43.0 3.61e-01 81.3% 41.4%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 43.0 3.94e-01 73.3% 55.1%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 47.0 4.27e-01 86.7% 83.5%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 48.0 3.90e-01 86.7% 61.3%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 47.0 4.36e-01 85.3% 70.5%
2q7dA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 46.0 3.31e-01 81.3% 48.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 48.0 4.12e-01 89.3% 73.3%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 46.0 4.22e-01 85.3% 67.7%
3d34B01 2.60.40.2130 Mainly Beta › Sandwich › Immunoglobulin-like › F-spondin domain 0.58 47.0 3.68e-01 90.7% 72.0%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.58 44.0 3.84e-01 81.3% 55.8%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.58 31.0 3.41e-01 76.0% 62.3%
3d4iB01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.58 42.0 2.98e-01 78.7% 58.2%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.57 42.0 3.84e-01 81.3% 73.1%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 42.0 4.19e-01 80.0% 93.7%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 43.0 2.97e-01 81.3% 32.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.00e-01 86.7% 78.8%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 41.0 4.06e-01 80.0% 91.6%
1auvA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 44.0 3.82e-01 81.3% 58.1%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 44.0 3.58e-01 90.7% 51.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 44.0 4.48e-01 93.3% 92.1%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 41.0 3.51e-01 85.3% 48.8%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 43.0 2.98e-01 93.3% 63.0%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.22e-01 84.0% 54.8%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 43.0 3.58e-01 94.7% 70.5%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.08e-01 97.3% 84.3%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 42.0 3.09e-01 93.3% 48.8%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 35.0 3.09e-01 72.0% 52.4%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 42.0 3.81e-01 94.7% 80.0%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.24e-01 93.3% 94.0%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 34.0 2.94e-01 70.7% 66.7%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.51 41.0 3.33e-01 89.3% 89.7%
1y8xB00 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.50 36.0 3.46e-01 81.3% 64.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593981 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.74 50.0 4.50e-01 70.7% 57.1%
2028252 3986.2.1.1 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd 0.73 49.0 5.25e-01 81.3% 81.2%
4265395 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.73 50.0 4.33e-01 72.0% 48.7%
3941935 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 50.0 4.31e-01 72.0% 49.6%
3933380 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 50.0 4.30e-01 72.0% 53.0%
4085698 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 50.0 4.23e-01 72.0% 46.2%
4155354 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 50.0 4.22e-01 72.0% 46.7%
4647537 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 50.0 4.35e-01 72.0% 50.0%
4568546 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.72 49.0 4.25e-01 72.0% 49.6%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.71 49.0 4.14e-01 72.0% 51.2%
4946583 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.71 49.0 4.22e-01 72.0% 53.9%
3295157 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.71 53.0 3.60e-01 81.3% 43.6%
4300924 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 49.0 4.21e-01 72.0% 48.7%
4345869 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.70 48.0 4.21e-01 70.7% 54.5%
5016503 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.70 60.0 5.26e-01 94.7% 81.8%
3972650 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 53.0 4.66e-01 81.3% 97.3%
4331814 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 48.0 4.19e-01 72.0% 48.7%
4281749 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 48.0 4.14e-01 72.0% 49.2%
4083103 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 48.0 4.02e-01 70.7% 48.8%
4490981 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.69 48.0 4.22e-01 72.0% 50.9%
4625721 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.69 48.0 4.15e-01 73.3% 49.2%
5011570 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.69 48.0 4.10e-01 72.0% 51.3%
2579422 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.69 54.0 5.05e-01 85.3% 76.6%
154683 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.68 47.0 4.29e-01 72.0% 59.8%
4035839 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.68 47.0 4.09e-01 72.0% 52.2%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.44e-01 81.3% 57.7%
2896602 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.68 54.0 4.89e-01 85.3% 84.0%
4028523 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.68 53.0 4.94e-01 85.3% 88.4%
3402464 304.56.1.10 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › R1_ABCA1 0.68 48.0 4.17e-01 74.7% 78.3%
3273123 3578.1.1.0 beta sandwiches › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE 0.66 51.0 4.26e-01 81.3% 66.1%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 52.0 4.36e-01 86.7% 70.0%
3996298 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 47.0 4.66e-01 76.0% 100.0%
3273510 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 50.0 2.93e-01 82.7% 58.4%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.64 44.0 4.77e-01 81.3% 90.0%
3248448 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.63 49.0 3.61e-01 84.0% 60.0%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.62 42.0 4.84e-01 74.7% 100.0%
4088887 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 44.0 4.00e-01 78.7% 80.0%
3955717 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.61 45.0 3.93e-01 82.7% 71.2%
3252371 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.60 46.0 3.24e-01 81.3% 42.7%
4450183 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.60 45.0 3.96e-01 81.3% 76.5%
4332271 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.60 49.0 4.12e-01 88.0% 71.5%
3722170 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.57 42.0 3.32e-01 80.0% 89.4%
1117738 10.32.1.52 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.56 47.0 3.50e-01 90.7% 58.5%
3490257 11.1.4.75 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_3rd 0.56 43.0 3.77e-01 86.7% 86.7%
2813830 10.32.1.52 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.55 44.0 3.29e-01 86.7% 58.7%
3213166 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 39.0 2.66e-01 81.3% 60.0%
5018703 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.53 39.0 3.76e-01 82.7% 97.8%
4448380 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.52 41.0 3.59e-01 88.0% 70.0%
3706431 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 41.0 3.76e-01 90.7% 68.3%
5014173 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 41.0 2.76e-01 94.7% 33.8%
3645596 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.51 43.0 2.61e-01 98.7% 68.6%
3225936 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.50 37.0 2.53e-01 81.3% 36.6%