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MW900438.1__QVJ07724.1__S1R3Y_000015__00015

Bact-Vir

MW900438.1__QVJ07724.1__S1R3Y_000015__00015

Identity

Accession:
MW900438 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-94
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 47.0 4.85e-01 80.2% 74.7%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.66 49.0 3.94e-01 78.0% 89.8%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 45.0 3.88e-01 71.4% 68.8%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 49.0 4.08e-01 80.2% 93.8%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.65 47.0 4.49e-01 76.9% 97.2%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.64 46.0 3.51e-01 74.7% 52.9%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 4.00e-01 71.4% 66.9%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.63 46.0 4.10e-01 74.7% 77.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 4.03e-01 71.4% 79.5%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 4.06e-01 71.4% 77.0%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 4.21e-01 71.4% 82.5%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.62 40.0 3.24e-01 75.8% 32.6%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.62 45.0 3.88e-01 75.8% 72.3%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 44.0 3.43e-01 74.7% 100.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 49.0 3.68e-01 86.8% 91.5%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 50.0 3.96e-01 87.9% 88.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 51.0 4.07e-01 93.4% 50.5%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 49.0 3.63e-01 87.9% 90.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 5.03e-01 91.2% 100.0%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 43.0 3.72e-01 74.7% 81.1%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 49.0 4.28e-01 92.3% 74.5%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 52.0 4.90e-01 98.9% 79.5%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.79e-01 74.7% 87.3%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.92e-01 91.2% 98.9%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 47.0 3.51e-01 92.3% 83.2%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 47.0 3.86e-01 90.1% 87.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.74e-01 92.3% 100.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.04e-01 75.8% 78.9%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.94e-01 80.2% 62.3%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.57 41.0 3.89e-01 82.4% 63.3%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 40.0 3.56e-01 74.7% 98.5%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.82e-01 74.7% 80.7%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.56 37.0 3.72e-01 82.4% 65.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.86e-01 86.8% 100.0%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 45.0 4.27e-01 89.0% 97.3%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 41.0 3.67e-01 78.0% 95.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.42e-01 93.4% 100.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.07e-01 93.4% 72.7%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 44.0 4.09e-01 91.2% 82.8%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.55e-01 79.1% 97.1%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.54 39.0 2.93e-01 78.0% 97.2%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 37.0 2.92e-01 70.3% 100.0%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.53 38.0 3.65e-01 84.6% 65.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 4.16e-01 73.6% 100.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.41e-01 97.8% 86.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.64e-01 89.0% 67.3%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 2.96e-01 98.9% 64.0%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 34.0 3.33e-01 89.0% 59.4%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.32e-01 85.7% 88.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.93e-01 89.0% 100.0%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 3.05e-01 95.6% 32.3%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 37.0 3.37e-01 76.9% 88.6%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 2.85e-01 74.7% 76.1%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 42.0 3.68e-01 92.3% 75.5%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 35.0 3.41e-01 73.6% 82.9%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 36.0 3.19e-01 75.8% 81.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4283898 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.73 48.0 4.81e-01 81.3% 65.3%
4337472 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.72 48.0 4.73e-01 80.2% 65.3%
4152684 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.71 44.0 4.76e-01 80.2% 73.1%
3957622 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.70 46.0 4.80e-01 81.3% 72.3%
4254437 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 48.0 4.96e-01 81.3% 77.6%
3618718 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 46.0 4.26e-01 71.4% 77.4%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 49.0 5.20e-01 85.7% 87.5%
4092565 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 49.0 3.98e-01 78.0% 90.0%
3263743 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.66 48.0 4.37e-01 76.9% 100.0%
3974693 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 42.0 3.26e-01 73.6% 28.8%
1323187 219.1.1.38 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C93 0.64 41.0 3.29e-01 73.6% 32.6%
1165706 219.1.1.57 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CIF 0.63 53.0 4.33e-01 93.4% 76.1%
3474038 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 47.0 4.09e-01 79.1% 97.9%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 48.0 5.25e-01 86.8% 100.0%
3390155 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 45.0 4.67e-01 80.2% 81.2%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 42.0 4.21e-01 85.7% 68.4%
3581817 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 42.0 4.74e-01 78.0% 98.5%
4008273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.81e-01 86.8% 95.7%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.62e-01 71.4% 100.0%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 49.0 4.94e-01 94.5% 86.7%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 46.0 5.01e-01 89.0% 98.7%
7384 219.1.1.21 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.61 51.0 4.07e-01 93.4% 50.5%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 52.0 4.91e-01 96.7% 78.2%
3926817 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.60 53.0 4.36e-01 100.0% 64.5%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.60 48.0 4.91e-01 89.0% 96.7%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 47.0 4.60e-01 93.4% 79.0%
4372404 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 45.0 4.40e-01 81.3% 84.0%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 38.0 4.37e-01 74.7% 100.0%
3496497 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 41.0 3.19e-01 74.7% 33.7%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 46.0 4.89e-01 91.2% 98.8%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.34e-01 84.6% 90.0%
1772519 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.57 46.0 3.48e-01 91.2% 94.8%
3526900 269.1.1.0 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.57 47.0 3.18e-01 93.4% 45.2%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 47.0 4.78e-01 91.2% 95.6%
4963369 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 43.0 3.54e-01 80.2% 100.0%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 43.0 4.12e-01 91.2% 68.2%
3448215 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.57 42.0 4.52e-01 80.2% 98.7%
3600139 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.34e-01 89.0% 79.1%
3724417 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 46.0 3.96e-01 91.2% 100.0%
None 0.56 49.0 2.91e-01 100.0% 16.1%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.26e-01 79.1% 100.0%
3893654 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.56 46.0 4.34e-01 92.3% 80.9%
3224512 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 4.42e-01 90.1% 88.3%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.55 46.0 3.65e-01 91.2% 70.3%
3744149 281.1.1.1 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.55 45.0 3.30e-01 90.1% 40.9%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.34e-01 93.4% 90.9%
3713672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.04e-01 86.8% 69.6%
3710913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.23e-01 93.4% 85.0%
3971620 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 44.0 3.83e-01 91.2% 76.7%
3969739 1.1.17.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › PF30586 0.54 44.0 3.34e-01 92.3% 72.5%
3231925 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 4.35e-01 91.2% 88.0%
1031128 11.1.4.26 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4458 0.53 38.0 3.63e-01 84.6% 63.8%
3255732 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 43.0 4.31e-01 91.2% 100.0%
3718969 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 43.0 3.48e-01 90.1% 80.0%
4606765 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.52 43.0 4.07e-01 91.2% 84.5%
4969694 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.52 41.0 3.40e-01 86.8% 100.0%
3754551 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 44.0 4.05e-01 93.4% 96.6%
3586233 4135.1.1.0 beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.52 41.0 3.64e-01 89.0% 76.4%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.51 42.0 3.04e-01 91.2% 57.8%
3608011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.01e-01 94.5% 72.5%
3906109 4135.1.1.0 beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.51 42.0 3.65e-01 89.0% 74.6%
4572937 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.51 39.0 3.18e-01 81.3% 61.8%
3414972 4252.1.1.15 beta barrels › AttH-like › AttH-like › AttH-like › PF30558 0.51 36.0 3.03e-01 73.6% 96.9%
4937607 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.50 40.0 3.12e-01 86.8% 79.0%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.43e-01 90.1% 65.4%