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MW924638.1__QUE25369.1__SEA_FIZZLES_75__00075

Bact-Vir

MW924638.1__QUE25369.1__SEA_FIZZLES_75__00075

Identity

Accession:
MW924638 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Squashvirus› Microbacterium_phage_Fizzles

TaxID: 2829391

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-56
PDB
Domain cluster: rep: OL944604.1__UKL14847.1__X__00016__D8-58
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.03e-01 92.2% 77.1%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 4.56e-01 90.2% 79.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.49e-01 92.2% 90.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.23e-01 96.1% 87.0%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 4.41e-01 92.2% 66.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.78e-01 84.3% 83.1%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.67 58.0 4.69e-01 100.0% 54.5%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.90e-01 90.2% 90.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.90e-01 90.2% 78.8%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 54.0 3.90e-01 92.2% 97.3%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.66 47.0 4.97e-01 80.4% 100.0%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 45.0 4.37e-01 72.5% 78.9%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.07e-01 98.0% 51.5%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.87e-01 100.0% 79.5%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 54.0 4.40e-01 98.0% 88.1%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.11e-01 100.0% 66.2%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.28e-01 100.0% 63.9%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.26e-01 92.2% 70.7%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.93e-01 82.4% 82.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.01e-01 92.2% 60.2%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 3.72e-01 92.2% 45.9%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 50.0 4.38e-01 98.0% 98.8%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.62e-01 86.3% 94.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.72e-01 100.0% 75.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.01e-01 100.0% 56.4%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 3.72e-01 100.0% 47.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.45e-01 88.2% 91.5%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.59 40.0 3.26e-01 72.5% 82.1%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 49.0 4.02e-01 100.0% 88.5%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 48.0 4.34e-01 96.1% 85.1%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 46.0 3.91e-01 90.2% 61.1%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 47.0 3.69e-01 100.0% 48.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.75e-01 100.0% 100.0%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 41.0 4.02e-01 76.5% 71.9%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.57 47.0 4.04e-01 100.0% 93.4%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.60e-01 82.4% 85.4%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 3.73e-01 92.2% 59.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 46.0 3.28e-01 100.0% 47.9%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 45.0 4.09e-01 92.2% 95.8%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 47.0 3.93e-01 100.0% 88.8%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.56 45.0 3.35e-01 92.2% 36.4%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 47.0 3.44e-01 100.0% 34.6%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 44.0 3.53e-01 94.1% 88.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.40e-01 100.0% 90.3%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.35e-01 100.0% 48.1%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 40.0 2.85e-01 80.4% 37.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 44.0 3.59e-01 100.0% 84.4%
2jysA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 38.0 3.17e-01 76.5% 67.0%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.06e-01 90.2% 44.1%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.26e-01 100.0% 40.1%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 41.0 3.61e-01 96.1% 80.7%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.01e-01 100.0% 26.9%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 38.0 2.78e-01 90.2% 42.4%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.06e-01 100.0% 64.8%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.19e-01 100.0% 38.4%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.67e-01 100.0% 61.2%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.12e-01 96.1% 96.9%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.50 39.0 3.81e-01 96.1% 90.2%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 59.0 5.27e-01 100.0% 83.7%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 62.0 5.07e-01 100.0% 92.6%
3514191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.04e-01 100.0% 56.0%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 4.50e-01 90.2% 69.5%
3934628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.07e-01 100.0% 62.2%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 4.86e-01 98.0% 71.6%
5036381 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.70 49.0 4.73e-01 76.5% 81.7%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.02e-01 90.2% 97.1%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.70 54.0 5.44e-01 86.3% 100.0%
140210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.23e-01 96.1% 87.0%
3524130 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 55.0 4.31e-01 88.2% 56.4%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.32e-01 96.1% 98.5%
1489669 3934.1.1.1 ↗ a+b complex topology › Late protein H7 › Late protein H7 › Late protein H7 › Pox_H7 0.69 48.0 3.65e-01 80.4% 31.6%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 55.0 5.00e-01 90.2% 97.1%
3647393 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 55.0 4.16e-01 88.2% 55.2%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 54.0 4.76e-01 90.2% 81.2%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 54.0 4.27e-01 88.2% 56.4%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.69 55.0 5.07e-01 88.2% 78.5%
3508415 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 55.0 4.14e-01 90.2% 39.2%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 55.0 4.85e-01 90.2% 69.3%
3269744 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.68 54.0 4.38e-01 92.2% 62.9%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 55.0 4.43e-01 94.1% 56.2%
3226615 4.1.1.389 ↗ beta barrels › SH3 › SH3 › SH3 › PF30352 0.67 57.0 4.76e-01 100.0% 68.4%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 4.15e-01 92.2% 48.3%
3594795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 4.31e-01 90.2% 61.0%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 52.0 4.39e-01 88.2% 54.4%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.75e-01 100.0% 85.9%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 51.0 4.31e-01 88.2% 67.8%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 50.0 4.13e-01 92.2% 61.0%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.90e-01 90.2% 94.5%
3854864 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 54.0 4.38e-01 100.0% 49.0%
2127246 4.8.1.4 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.64 50.0 4.65e-01 90.2% 89.9%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 51.0 4.22e-01 92.2% 63.0%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.64 49.0 4.69e-01 86.3% 100.0%
4580772 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 53.0 4.64e-01 100.0% 65.9%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.55e-01 100.0% 85.6%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.90e-01 90.2% 94.5%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.63 49.0 3.38e-01 92.2% 25.2%
3517377 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 54.0 4.64e-01 100.0% 63.5%
3408327 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 53.0 4.50e-01 100.0% 62.2%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 54.0 3.61e-01 100.0% 30.2%
3253266 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.26e-01 100.0% 71.4%
3407089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.64e-01 100.0% 70.0%
4055256 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.46e-01 100.0% 61.1%
3877478 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 55.0 4.43e-01 100.0% 55.0%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 49.0 4.93e-01 90.2% 98.1%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.53e-01 100.0% 64.7%
3447819 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 52.0 4.80e-01 100.0% 98.6%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.62 50.0 4.45e-01 98.0% 80.0%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 48.0 4.70e-01 90.2% 93.2%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 51.0 4.26e-01 100.0% 54.0%
3973332 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 4.62e-01 100.0% 86.7%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 53.0 4.44e-01 100.0% 61.1%
3366414 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.61 49.0 3.99e-01 100.0% 77.4%
4197746 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 51.0 4.42e-01 100.0% 80.0%
4166012 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 50.0 4.52e-01 100.0% 93.3%
4023481 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 3.66e-01 100.0% 87.5%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.66e-01 100.0% 86.2%
3669824 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.59 41.0 4.03e-01 72.5% 70.9%
3386201 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 45.0 3.24e-01 88.2% 62.4%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.59 49.0 3.56e-01 100.0% 34.5%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.75e-01 100.0% 93.3%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.58 48.0 4.28e-01 100.0% 70.0%
4660673 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 49.0 4.25e-01 100.0% 84.7%
1408049 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.58 48.0 3.67e-01 100.0% 41.2%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 49.0 4.11e-01 100.0% 88.4%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.58 46.0 4.41e-01 92.2% 100.0%
3699652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.60e-01 100.0% 87.7%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.58 45.0 4.24e-01 94.1% 90.0%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 42.0 3.60e-01 82.4% 85.6%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 48.0 4.33e-01 100.0% 78.7%
3909375 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 42.0 3.20e-01 82.4% 58.5%
3475699 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 42.0 3.44e-01 82.4% 75.2%
4459065 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 46.0 4.00e-01 100.0% 62.2%
4389625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.55 40.0 4.00e-01 82.4% 92.7%
3999177 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.55 42.0 3.87e-01 90.2% 92.0%
3231483 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 46.0 3.24e-01 100.0% 58.4%
3979888 11.1.1.1350 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29987 0.53 42.0 3.25e-01 90.2% 73.6%
1680145 219.1.1.43 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.52 42.0 2.80e-01 100.0% 21.6%
4082437 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 40.0 4.01e-01 96.1% 94.5%
3502194 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.50 41.0 3.49e-01 100.0% 89.5%
D2 high residues 61-113
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c2jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 49.0 3.49e-01 75.5% 32.1%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 52.0 3.92e-01 92.5% 33.1%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.69 60.0 5.00e-01 100.0% 75.5%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.67 54.0 4.62e-01 96.2% 53.6%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 51.0 3.90e-01 88.7% 74.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 44.0 4.20e-01 71.7% 64.1%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.65 45.0 3.64e-01 81.1% 37.5%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 51.0 4.66e-01 94.3% 67.1%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.63 45.0 3.65e-01 79.2% 41.2%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 45.0 4.17e-01 94.3% 58.3%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.62 50.0 4.56e-01 94.3% 77.3%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 43.0 4.14e-01 75.5% 64.5%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.61 43.0 3.66e-01 94.3% 48.1%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 43.0 4.36e-01 88.7% 79.2%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.31e-01 84.9% 67.6%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.60 51.0 5.01e-01 98.1% 91.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 43.0 3.68e-01 77.4% 48.3%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.60 48.0 4.36e-01 94.3% 64.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.60 43.0 4.03e-01 100.0% 62.5%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 50.0 3.45e-01 96.2% 79.8%
1i1rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 47.0 3.49e-01 96.2% 70.1%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.59 44.0 3.79e-01 81.1% 58.0%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.58 46.0 3.93e-01 94.3% 68.0%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.58 51.0 4.74e-01 98.1% 80.9%
7lwzB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.58 47.0 3.32e-01 96.2% 58.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 46.0 4.07e-01 100.0% 60.8%
1sxjD03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.58 50.0 4.22e-01 100.0% 86.8%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.58 44.0 3.95e-01 83.0% 58.7%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.57 42.0 4.03e-01 83.0% 69.2%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.22e-01 81.1% 52.3%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 43.0 4.49e-01 100.0% 89.8%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.55 46.0 4.08e-01 94.3% 70.9%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 45.0 3.67e-01 96.2% 50.0%
4bouA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 46.0 3.50e-01 100.0% 75.2%
7kh2B01 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.54 46.0 3.02e-01 100.0% 35.8%
1mqsA02 3.40.50.1910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 2 0.54 45.0 3.13e-01 100.0% 90.4%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.53 40.0 3.79e-01 83.0% 67.7%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.52 47.0 3.83e-01 100.0% 56.1%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.52 42.0 3.70e-01 100.0% 60.5%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.82e-01 94.3% 70.6%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 44.0 3.38e-01 100.0% 79.2%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 45.0 3.94e-01 94.3% 93.4%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 3.73e-01 96.2% 77.8%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 41.0 3.03e-01 92.5% 82.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3351474 7010.1.1.0 ↗ alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator 0.75 61.0 5.83e-01 96.2% 76.9%
3314379 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.75 62.0 5.58e-01 88.7% 72.9%
3807996 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.73 56.0 5.33e-01 86.8% 70.8%
3224423 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 60.0 6.02e-01 96.2% 92.7%
4610257 6130.1.1.0 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.70 59.0 5.50e-01 92.5% 75.4%
3512559 192.1.1.37 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.69 60.0 5.62e-01 98.1% 95.4%
3958984 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.69 57.0 4.53e-01 100.0% 60.5%
3811948 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.67 56.0 5.26e-01 100.0% 81.4%
3909150 5063.1.1.15 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA 0.67 57.0 5.16e-01 98.1% 82.7%
4636432 6130.1.1.0 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.65 52.0 4.95e-01 92.5% 75.4%
3927398 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 55.0 4.52e-01 100.0% 50.5%
4295625 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.64 46.0 4.49e-01 100.0% 68.3%
3481034 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.64 51.0 4.48e-01 100.0% 58.7%
4526829 6130.1.1.1 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.63 47.0 4.28e-01 100.0% 60.0%
3595117 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.63 51.0 3.53e-01 98.1% 34.3%
4977068 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.63 44.0 3.60e-01 75.5% 39.4%
3693465 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 43.0 3.39e-01 73.6% 36.7%
5058468 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.62 51.0 4.64e-01 96.2% 72.0%
3580117 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.62 52.0 4.73e-01 100.0% 85.3%
3697477 7581.1.1.7 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.62 50.0 3.11e-01 100.0% 14.7%
4012820 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 45.0 3.18e-01 79.2% 34.3%
3591291 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.61 49.0 3.46e-01 98.1% 26.6%
3502800 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.61 43.0 3.68e-01 75.5% 46.7%
3607406 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.59 45.0 3.97e-01 84.9% 90.0%
3456467 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.58 46.0 4.11e-01 96.2% 61.2%
4987417 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.58 41.0 3.69e-01 75.5% 56.0%
3270778 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.57 47.0 3.99e-01 100.0% 59.0%
4083492 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.54 45.0 4.26e-01 94.3% 83.1%
2893266 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.52 46.0 3.86e-01 100.0% 65.2%
3414102 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.51 45.0 4.11e-01 98.1% 97.1%