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MW924638.1__QUE25390.1__SEA_FIZZLES_96__00096

Bact-Vir

MW924638.1__QUE25390.1__SEA_FIZZLES_96__00096

Identity

Accession:
MW924638 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Squashvirus› Microbacterium_phage_Fizzles

TaxID: 2829391

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 72.0 6.65e-01 98.0% 100.0%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 70.0 6.58e-01 98.0% 91.9%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.79 64.0 4.19e-01 90.0% 22.9%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.75 62.0 5.96e-01 92.0% 91.4%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.70 59.0 5.16e-01 96.0% 66.2%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.69 58.0 3.59e-01 96.0% 16.4%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 55.0 5.29e-01 96.0% 82.0%
2pusA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 55.0 5.49e-01 96.0% 100.0%
4jocA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.64 55.0 3.25e-01 94.0% 19.4%
1u97A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.64 47.0 4.33e-01 84.0% 60.9%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 55.0 3.55e-01 100.0% 26.9%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.63 50.0 4.45e-01 88.0% 62.5%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.62 40.0 3.07e-01 70.0% 25.8%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 42.0 4.08e-01 90.0% 65.5%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 45.0 2.82e-01 82.0% 13.2%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 3.71e-01 98.0% 62.6%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 50.0 3.41e-01 98.0% 26.2%
3rqtA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.54 40.0 2.73e-01 98.0% 19.7%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.54 45.0 3.30e-01 100.0% 69.5%
4mcoA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.53 46.0 2.82e-01 100.0% 74.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4564184 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.82 73.0 4.60e-01 98.0% 43.0%
2914508 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.82 68.0 4.19e-01 92.0% 17.3%
3398414 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.81 64.0 6.70e-01 88.0% 95.6%
3242821 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.76 66.0 6.26e-01 98.0% 91.7%
3945398 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.75 62.0 4.31e-01 92.0% 30.0%
3888162 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 65.0 4.95e-01 100.0% 85.8%
3588414 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.74 62.0 3.51e-01 94.0% 12.3%
3936633 2004.1.1.33 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind 0.74 63.0 4.02e-01 100.0% 71.3%
4083064 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.73 63.0 6.21e-01 100.0% 94.3%
1147509 2003.1.1.155 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N, F420_oxidored 0.60 50.0 3.42e-01 98.0% 26.8%
D2 medium residues 51-151
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 4.61e-01 93.1% 67.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 42.0 4.47e-01 94.1% 77.9%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 4.68e-01 90.1% 78.9%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.61 36.0 3.25e-01 99.0% 41.7%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.61 35.0 3.67e-01 76.2% 60.6%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.56e-01 94.1% 83.5%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.64e-01 90.1% 86.1%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 52.0 4.39e-01 100.0% 65.9%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 50.0 4.21e-01 100.0% 94.4%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 50.0 4.28e-01 100.0% 94.0%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 50.0 4.17e-01 100.0% 86.1%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.56 48.0 4.21e-01 93.1% 87.3%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 49.0 4.12e-01 100.0% 97.8%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 4.45e-01 87.1% 90.0%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 43.0 3.89e-01 89.1% 61.5%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.20e-01 96.0% 71.7%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.40e-01 96.0% 76.2%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 49.0 4.40e-01 100.0% 98.6%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.31e-01 92.1% 77.6%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 4.20e-01 100.0% 77.3%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.54 44.0 4.10e-01 90.1% 95.4%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 4.24e-01 95.0% 99.2%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.52 44.0 3.80e-01 91.1% 78.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.75e-01 87.1% 67.8%
2c43A02 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 42.0 3.91e-01 86.1% 99.2%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 40.0 4.34e-01 100.0% 98.8%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 4.10e-01 97.0% 98.5%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 46.0 4.14e-01 100.0% 95.0%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.74e-01 91.1% 97.2%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 39.0 3.72e-01 87.1% 69.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 51.0 5.43e-01 93.1% 83.3%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 49.0 4.72e-01 93.1% 63.5%
1505941 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.69 37.0 3.63e-01 90.1% 49.1%
3574392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 5.22e-01 93.1% 74.2%
3744541 220.1.1.196 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPO71 0.66 57.0 4.87e-01 93.1% 79.4%
3486278 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 5.08e-01 93.1% 79.0%
3612244 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 5.24e-01 93.1% 74.4%
2321103 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.65 33.0 3.26e-01 89.1% 44.5%
3718188 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.65 56.0 5.24e-01 93.1% 76.7%
3171728 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 57.0 4.97e-01 93.1% 65.5%
933 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.65 49.0 4.61e-01 93.1% 67.2%
1787989 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.64 36.0 3.53e-01 90.1% 51.9%
3597310 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.91e-01 93.1% 70.0%
3519329 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.78e-01 93.1% 73.6%
3795297 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.75e-01 93.1% 75.4%
4303134 220.1.1.191 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.61 52.0 4.43e-01 90.1% 66.5%
3817243 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 52.0 4.79e-01 96.0% 91.9%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 49.0 4.42e-01 94.1% 64.4%
3392597 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 47.0 4.27e-01 93.1% 62.2%
4200316 220.1.1.191 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.60 51.0 4.34e-01 90.1% 66.5%
3945260 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.60 50.0 4.31e-01 91.1% 94.3%
3900377 220.1.1.41 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH 0.56 46.0 4.35e-01 93.1% 73.6%
3992152 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.55 48.0 4.22e-01 96.0% 73.3%
3291529 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 35.0 3.47e-01 81.2% 60.2%
3682205 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.45e-01 86.1% 52.4%
3605497 11.1.1.416 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.54 44.0 3.80e-01 91.1% 94.5%
3285421 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.53 46.0 4.15e-01 97.0% 80.7%
2034120 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.53 44.0 3.05e-01 88.1% 97.5%
3224590 306.10.1.2 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › H1_KCTD8_12_16 0.53 44.0 4.07e-01 88.1% 94.4%
3846579 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.53 43.0 3.68e-01 91.1% 84.1%
3257581 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.52 42.0 3.74e-01 90.1% 93.5%
3408727 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 42.0 3.60e-01 90.1% 88.5%
3507788 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.51 46.0 3.98e-01 100.0% 86.2%
3639340 11.1.1.498 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 0.51 41.0 3.62e-01 91.1% 88.1%
3241110 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 35.0 3.06e-01 74.3% 47.1%
3182884 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.33e-01 90.1% 94.5%