Back to structures

MW960030.1__QWY83012.1__X__00058

Bact-Vir

MW960030.1__QWY83012.1__X__00058

Identity

Accession:
MW960030 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-35_109-131
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 62.0 6.25e-01 100.0% 100.0%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 47.0 3.95e-01 96.3% 48.4%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 45.0 3.05e-01 81.5% 69.0%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.60 50.0 3.96e-01 96.3% 44.2%
2a5yB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 45.0 3.63e-01 96.3% 43.1%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 44.0 3.98e-01 87.0% 97.5%
2iylD01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 48.0 4.53e-01 96.3% 81.5%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 44.0 3.66e-01 100.0% 47.2%
1g9sA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 48.0 3.40e-01 100.0% 32.5%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 48.0 3.38e-01 98.1% 38.2%
4ci1B03 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 4.01e-01 96.3% 98.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988499 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.80 56.0 5.87e-01 85.2% 80.0%
3279945 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.79 60.0 6.47e-01 90.7% 95.6%
4009443 101.26.1.0 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain 0.77 57.0 6.15e-01 88.9% 93.3%
3164594 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 57.0 6.14e-01 88.9% 93.3%
5016007 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.77 59.0 6.45e-01 92.6% 97.8%
3773107 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.76 53.0 5.54e-01 85.2% 80.0%
3544445 101.26.1.0 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain 0.76 58.0 6.25e-01 92.6% 97.8%
3403652 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.75 52.0 5.86e-01 85.2% 100.0%
1544881 632.2.1.4 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like 0.72 67.0 6.65e-01 100.0% 96.4%
3743639 2002.1.1.56 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.62 43.0 2.67e-01 92.6% 12.1%
5012798 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 51.0 5.14e-01 96.3% 92.7%
3617518 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.59 52.0 4.80e-01 98.1% 91.4%
3376301 3361.1.1.0 alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 0.59 47.0 4.53e-01 92.6% 96.9%
3905947 110.1.1.11 alpha arrays › DEATH domain › DEATH domain › DEATH domain › HSR 0.56 42.0 3.46e-01 87.0% 43.6%
3216889 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.56 43.0 4.74e-01 88.9% 100.0%
3946561 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.55 47.0 3.41e-01 96.3% 57.4%
4183142 11.1.1.154 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.53 46.0 3.18e-01 100.0% 33.3%
D2 medium residues 36-108
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 44.0 4.68e-01 86.3% 62.5%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.79 46.0 4.52e-01 87.7% 54.4%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 50.0 5.51e-01 94.5% 78.3%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 37.0 4.17e-01 74.0% 62.1%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.70 42.0 3.92e-01 87.7% 47.8%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 44.0 4.23e-01 86.3% 56.1%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.69 36.0 3.63e-01 83.6% 49.3%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 43.0 4.41e-01 93.2% 69.1%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 58.0 3.89e-01 98.6% 37.6%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 36.0 3.66e-01 83.6% 54.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 46.0 4.53e-01 95.9% 69.2%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.65 42.0 4.39e-01 93.2% 72.1%
7w5gA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 57.0 3.66e-01 100.0% 29.8%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.64 56.0 4.33e-01 100.0% 51.7%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.62e-01 97.3% 89.2%
7y9hB01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 55.0 3.62e-01 100.0% 31.8%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 46.0 4.61e-01 95.9% 75.3%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 39.0 3.82e-01 91.8% 58.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.14e-01 86.3% 68.8%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 38.0 4.04e-01 93.2% 76.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.23e-01 83.6% 97.7%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.59 41.0 3.67e-01 74.0% 59.8%
1zvuA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.58 51.0 4.11e-01 97.3% 59.3%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.57 38.0 3.01e-01 74.0% 31.3%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 45.0 4.03e-01 95.9% 59.8%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 33.0 3.12e-01 89.0% 48.3%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 33.0 3.20e-01 83.6% 51.2%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 42.0 2.86e-01 84.9% 23.7%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.54 42.0 3.93e-01 100.0% 68.5%
3rvyA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 4.19e-01 100.0% 81.3%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 35.0 3.42e-01 97.3% 61.0%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 48.0 3.77e-01 100.0% 70.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 3.90e-01 95.9% 65.7%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.52 42.0 4.19e-01 93.2% 87.8%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.86e-01 82.2% 92.0%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 42.0 3.82e-01 93.2% 83.3%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.50 43.0 3.89e-01 100.0% 86.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243507 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.81 53.0 5.65e-01 90.4% 75.4%
3268716 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 48.0 4.92e-01 93.2% 65.7%
3789554 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 47.0 4.37e-01 97.3% 53.3%
3595288 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.72 54.0 4.56e-01 95.9% 48.3%
3243820 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.71 61.0 3.95e-01 95.9% 39.1%
3944885 101.1.1.355 alpha arrays › HTH › HTH › Three-helical HTH › DUF2857 0.70 38.0 4.07e-01 75.3% 60.0%
4928641 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.69 41.0 4.13e-01 89.0% 57.3%
3325325 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 45.0 4.38e-01 84.9% 61.3%
3409823 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.68 53.0 4.86e-01 94.5% 64.2%
988025 616.1.1.5 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › T6SS_Tsi2-like 0.64 45.0 4.51e-01 95.9% 71.1%
4369892 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.64 32.0 3.55e-01 87.7% 60.0%
3353701 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.60 51.0 4.60e-01 93.2% 70.0%
3213752 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 43.0 3.89e-01 79.5% 72.4%
4945888 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.58 47.0 4.61e-01 95.9% 80.0%
4681333 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.58 49.0 3.49e-01 93.2% 72.7%
3907742 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.58 49.0 4.71e-01 98.6% 83.5%
4963848 5068.1.1.0 alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 0.57 43.0 3.57e-01 86.3% 45.4%
3261028 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.57 46.0 4.44e-01 91.8% 100.0%
4984129 3290.1.1.1 alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto 0.56 47.0 4.36e-01 95.9% 93.7%
3285933 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.54 40.0 4.33e-01 78.1% 93.3%
4454337 5068.1.1.1 alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Cytochrom_B_C 0.54 42.0 3.52e-01 90.4% 89.0%
3266463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 38.0 4.15e-01 80.8% 98.2%
3871834 5086.1.1.99 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ApoL 0.54 44.0 4.36e-01 93.2% 86.3%
5025813 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 48.0 4.14e-01 97.3% 64.5%
5042923 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 46.0 4.02e-01 97.3% 74.8%
3963136 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.54 44.0 3.67e-01 94.5% 80.0%
4286197 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.53 40.0 3.94e-01 97.3% 76.2%
3391602 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 4.11e-01 89.0% 87.1%
3954906 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.53 45.0 3.60e-01 97.3% 69.7%
4973798 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.52 47.0 3.83e-01 100.0% 92.6%
3598688 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.52 43.0 3.45e-01 100.0% 57.1%
3738995 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.52 38.0 4.07e-01 78.1% 100.0%
3474421 101.1.2.365 alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.51 38.0 3.91e-01 79.5% 81.4%
5082787 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 42.0 3.76e-01 89.0% 74.0%
3222921 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 36.0 3.82e-01 80.8% 84.6%