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MW960031.1__QWY83126.1__X__00008

Bact-Vir

MW960031.1__QWY83126.1__X__00008

Identity

Accession:
MW960031 ↗
Kingdom:
phage

Quality

96.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpxB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 39.0 2.86e-01 72.1% 91.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4543988 4099.1.1.26 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.56 43.0 3.61e-01 88.5% 56.5%
D2 medium residues 62-135
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 47.0 3.54e-01 100.0% 32.0%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 46.0 3.50e-01 100.0% 31.0%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 46.0 3.43e-01 100.0% 29.5%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 46.0 3.45e-01 100.0% 30.8%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.41e-01 98.6% 31.5%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 52.0 4.36e-01 100.0% 55.2%
2kskA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.61 35.0 3.60e-01 93.2% 57.7%
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 53.0 3.53e-01 100.0% 87.9%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.42e-01 98.6% 34.3%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 53.0 3.74e-01 100.0% 31.5%
6lsaC01 2.70.230.10 Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › 0.60 48.0 3.51e-01 87.8% 56.7%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 50.0 3.42e-01 100.0% 87.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 47.0 4.22e-01 97.3% 61.6%
2xfaA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 39.0 3.26e-01 73.0% 81.8%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 48.0 4.46e-01 95.9% 100.0%
8d89A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 38.0 2.49e-01 71.6% 27.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.28e-01 83.8% 90.9%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 43.0 3.62e-01 89.2% 81.8%
1a7hA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.55 43.0 4.18e-01 97.3% 76.7%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 44.0 3.38e-01 90.5% 83.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.54 44.0 4.19e-01 91.9% 75.3%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 46.0 3.52e-01 100.0% 51.5%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 43.0 3.49e-01 89.2% 87.2%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 43.0 3.31e-01 90.5% 82.9%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 43.0 3.41e-01 90.5% 85.8%
5w1eA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 43.0 3.30e-01 91.9% 85.6%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 3.82e-01 100.0% 52.8%
2g7uC02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 43.0 3.30e-01 90.5% 82.6%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 46.0 3.49e-01 100.0% 82.7%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 44.0 3.34e-01 91.9% 81.9%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 42.0 4.49e-01 97.3% 100.0%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.68e-01 85.1% 77.7%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.66e-01 100.0% 56.2%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 38.0 3.24e-01 78.4% 86.0%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 3.68e-01 81.1% 70.0%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 39.0 2.51e-01 79.7% 24.0%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.32e-01 97.3% 94.2%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 40.0 2.89e-01 86.5% 66.0%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 42.0 3.27e-01 93.2% 84.3%
1s14B00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 43.0 3.41e-01 100.0% 66.3%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 3.43e-01 100.0% 63.9%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 40.0 3.15e-01 89.2% 79.1%
5y6iA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 41.0 3.27e-01 90.5% 89.4%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 39.0 3.76e-01 87.8% 75.8%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.51 41.0 3.52e-01 100.0% 83.7%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.80e-01 98.6% 100.0%
1yqsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 36.0 2.43e-01 78.4% 89.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.51 40.0 4.13e-01 89.2% 98.5%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 42.0 3.37e-01 94.6% 98.7%
3htvA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 3.15e-01 89.2% 81.0%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.50 34.0 2.98e-01 70.3% 47.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963821 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.63 55.0 3.85e-01 100.0% 30.4%
None 0.62 54.0 3.83e-01 100.0% 31.1%
4680317 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.62 53.0 3.81e-01 100.0% 31.1%
None 0.62 45.0 3.42e-01 98.6% 32.8%
None 0.61 53.0 3.76e-01 100.0% 30.8%
5024709 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.60 53.0 3.77e-01 100.0% 32.4%
4588679 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.60 53.0 3.71e-01 100.0% 33.5%
4940798 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.60 53.0 3.71e-01 100.0% 31.4%
None 0.60 52.0 3.71e-01 100.0% 30.8%
3280543 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.60 52.0 3.68e-01 100.0% 30.6%
3973007 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.60 52.0 3.66e-01 100.0% 30.0%
4976025 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.60 52.0 3.66e-01 100.0% 31.4%
4981026 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 51.0 3.65e-01 100.0% 42.1%
4994995 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 51.0 3.67e-01 100.0% 31.5%
4947903 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 52.0 3.64e-01 100.0% 31.0%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 49.0 5.10e-01 100.0% 97.1%
5035016 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 42.0 4.09e-01 87.8% 68.8%
3992652 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.58 35.0 3.36e-01 97.3% 51.8%
5061340 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.58 41.0 4.25e-01 87.8% 80.0%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.57 48.0 4.67e-01 98.6% 94.1%
3972951 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.57 47.0 4.71e-01 94.6% 97.3%
5034040 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.45e-01 74.3% 100.0%
3164938 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 42.0 2.90e-01 81.1% 89.9%
4976794 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.56 48.0 3.47e-01 100.0% 51.3%
3284893 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.56 46.0 3.49e-01 91.9% 85.6%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.33e-01 81.1% 100.0%
3622310 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.55 46.0 3.97e-01 98.6% 88.5%
5010282 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.55 47.0 3.54e-01 97.3% 39.5%
5048308 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.55 47.0 3.45e-01 100.0% 50.7%
4975764 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.55 42.0 4.35e-01 83.8% 88.6%
3969258 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.55 44.0 3.46e-01 89.2% 87.5%
4204256 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.55 44.0 3.41e-01 90.5% 84.0%
5017161 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.55 46.0 4.48e-01 100.0% 97.6%
5036092 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.54 47.0 3.41e-01 100.0% 59.6%
3288809 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.54 43.0 3.33e-01 89.2% 88.0%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.54 45.0 4.22e-01 98.6% 92.6%
3971877 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.54 43.0 3.35e-01 90.5% 84.0%
4027049 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 45.0 3.23e-01 100.0% 56.0%
3948072 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.54 43.0 3.29e-01 90.5% 79.5%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.54 38.0 4.21e-01 83.8% 100.0%
3290876 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.54 43.0 3.36e-01 90.5% 85.9%
4989851 2007.1.5.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.53 45.0 3.34e-01 94.6% 88.7%
3981146 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.53 44.0 3.37e-01 93.2% 81.4%
166471 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.53 43.0 3.41e-01 90.5% 85.8%
3589487 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.53 43.0 3.36e-01 90.5% 86.5%
3286886 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.53 43.0 3.36e-01 93.2% 82.8%
298008 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.53 43.0 3.31e-01 90.5% 83.5%
3372243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.36e-01 95.9% 91.3%
4008396 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.22e-01 95.9% 80.0%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 37.0 4.12e-01 73.0% 98.2%
4283161 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.53 43.0 3.22e-01 91.9% 74.5%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 37.0 4.08e-01 75.7% 100.0%
4473803 11.2.1.72 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29377 0.52 41.0 3.15e-01 89.2% 44.7%
5071630 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 44.0 3.19e-01 100.0% 53.3%
312351 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.52 41.0 3.22e-01 89.2% 82.8%
3892939 10.32.1.229 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.52 44.0 3.62e-01 95.9% 82.1%
4989110 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.52 42.0 4.16e-01 100.0% 86.3%
5016447 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.52 41.0 4.00e-01 97.3% 80.0%
3888404 1.1.2.38 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_PEX6 0.51 45.0 3.73e-01 98.6% 94.1%
5012226 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 3.34e-01 100.0% 73.7%
4944742 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.38e-01 86.5% 67.7%
4419885 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.51 41.0 3.19e-01 91.9% 80.5%
6852 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.51 41.0 3.23e-01 93.2% 86.1%
4395946 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.51 43.0 3.29e-01 93.2% 83.3%
4901024 1.2.1.0 beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain 0.50 37.0 3.09e-01 81.1% 97.2%
3964304 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.50 41.0 3.99e-01 100.0% 80.7%
4096826 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.50 40.0 3.59e-01 90.5% 80.0%