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MW960031.1__QWY83142.1__X__00024

Bact-Vir

MW960031.1__QWY83142.1__X__00024

Identity

Accession:
MW960031 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rigallicvirus› Rhizobium_phage_RHph_X2_24

TaxID: 2836082

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-98
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 43.0 4.84e-01 70.5% 92.9%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 40.0 3.71e-01 71.8% 48.1%
2dvjA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 45.0 3.72e-01 80.8% 43.1%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 41.0 3.85e-01 71.8% 55.7%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.59 35.0 3.49e-01 91.0% 52.9%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 37.0 3.32e-01 71.8% 43.9%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 39.0 4.23e-01 70.5% 90.8%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.56 40.0 3.26e-01 76.9% 57.3%
1peaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 46.0 3.61e-01 93.6% 55.1%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 3.16e-01 83.3% 34.3%
4evsA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 43.0 3.44e-01 89.7% 58.5%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 35.0 3.36e-01 71.8% 55.9%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.49e-01 91.0% 80.4%
2xtlA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.41e-01 78.2% 70.8%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.53 41.0 2.80e-01 87.2% 28.6%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 2.92e-01 84.6% 29.3%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.52 42.0 2.91e-01 93.6% 42.8%
2cx0A02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 36.0 3.57e-01 74.4% 98.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4859120 3856.1.2.0 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.69 50.0 4.65e-01 76.9% 75.5%
3414808 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 43.0 3.74e-01 71.8% 43.3%
3933443 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 42.0 4.41e-01 71.8% 74.3%
3512674 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 41.0 3.46e-01 71.8% 38.5%
3780015 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.63 41.0 3.27e-01 71.8% 31.9%
3396847 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 43.0 3.70e-01 71.8% 43.8%
2322691 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 42.0 3.62e-01 76.9% 43.4%
3264176 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 41.0 3.57e-01 71.8% 44.0%
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 41.0 3.85e-01 71.8% 60.0%
4965400 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 35.0 3.01e-01 78.2% 38.3%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 40.0 3.50e-01 74.4% 45.6%
3284879 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.58 41.0 3.97e-01 76.9% 65.6%
3300189 1.1.9.34 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 0.57 39.0 3.77e-01 70.5% 91.1%
3247002 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 38.0 3.48e-01 71.8% 49.1%
3490666 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 40.0 3.50e-01 74.4% 45.6%
3498726 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.57 40.0 3.68e-01 74.4% 64.8%
3225772 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 37.0 3.37e-01 71.8% 46.1%
3514017 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 39.0 3.46e-01 71.8% 48.7%
3214289 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 40.0 3.54e-01 74.4% 59.1%
3905081 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 37.0 3.28e-01 71.8% 43.2%
3220873 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.56 39.0 3.63e-01 74.4% 57.0%
3414159 1.1.9.34 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 0.56 40.0 3.90e-01 75.6% 94.1%
3625308 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 39.0 3.35e-01 74.4% 45.6%
4972514 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.56 44.0 3.69e-01 88.5% 58.6%
3542657 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.56 46.0 3.58e-01 96.2% 53.7%
4978876 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.55 45.0 3.67e-01 93.6% 95.6%
3239884 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 39.0 3.59e-01 74.4% 55.2%
3246307 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 37.0 3.35e-01 71.8% 47.8%
3512824 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 37.0 3.43e-01 71.8% 52.4%
4928397 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.55 37.0 3.27e-01 71.8% 61.3%
4639069 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.54 41.0 3.16e-01 84.6% 32.5%
None — 0.53 41.0 3.36e-01 89.7% 42.5%
3585652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 32.0 3.60e-01 85.9% 80.0%
3967506 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.52 42.0 3.13e-01 93.6% 78.8%
5079425 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.51 36.0 3.48e-01 74.4% 84.4%
4576540 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 34.0 3.73e-01 70.5% 96.7%
D2 high residues 689-819
PDB
Domain cluster: rep: PH2015_22_scaffold_0_prodigal-single.1__X__X__00160__D748-882
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 41.0 5.11e-01 99.2% 100.0%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.66 61.0 5.18e-01 100.0% 95.1%
2iumA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.64 58.0 4.97e-01 100.0% 97.6%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.63 58.0 5.68e-01 100.0% 97.9%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.62 57.0 5.73e-01 100.0% 100.0%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 43.0 4.91e-01 100.0% 98.9%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.62 43.0 4.64e-01 100.0% 83.3%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.61 55.0 4.98e-01 100.0% 97.7%
1kacA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.59 54.0 4.82e-01 100.0% 96.8%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.59 54.0 4.74e-01 100.0% 98.4%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.59 53.0 4.75e-01 100.0% 98.4%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.58 52.0 4.83e-01 100.0% 98.2%
2g30A01 2.60.40.1150 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 37.0 3.93e-01 100.0% 72.6%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.57 36.0 3.63e-01 99.2% 61.2%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 51.0 3.91e-01 100.0% 97.3%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 50.0 3.85e-01 100.0% 95.0%
3ammA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.55 50.0 4.05e-01 100.0% 97.6%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 50.0 3.88e-01 99.2% 100.0%
2zahA02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 4.08e-01 98.5% 78.1%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.54 41.0 4.12e-01 88.5% 77.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 38.0 4.12e-01 87.0% 88.7%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.54 41.0 4.08e-01 78.6% 78.9%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 48.0 3.75e-01 100.0% 95.2%
2bzvA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.53 48.0 4.69e-01 100.0% 98.6%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 47.0 3.59e-01 100.0% 93.8%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.49e-01 86.3% 79.8%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 4.05e-01 87.0% 91.6%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 46.0 3.51e-01 99.2% 79.3%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 47.0 3.68e-01 100.0% 76.8%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 4.08e-01 87.0% 91.2%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 46.0 3.95e-01 99.2% 96.7%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.50 45.0 3.70e-01 100.0% 74.0%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 40.0 3.80e-01 87.0% 95.7%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.50 40.0 2.61e-01 84.0% 35.1%
1qhdA01 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 4.11e-01 99.2% 98.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2491361 5092.1.1.0 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.86 81.0 8.18e-01 100.0% 99.2%
3164980 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.80 74.0 7.55e-01 99.2% 100.0%
2542700 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.64 59.0 4.90e-01 100.0% 93.7%
3220160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 35.0 3.43e-01 100.0% 50.7%
2834097 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.63 58.0 4.85e-01 100.0% 96.3%
1385851 5092.1.1.3 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Reo_sigmaC 0.62 57.0 5.73e-01 100.0% 98.5%
4630707 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 45.0 4.88e-01 96.2% 91.8%
1487334 5092.1.1.7 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Fibre_HD 0.59 44.0 4.68e-01 97.7% 89.7%
5064686 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.58 43.0 4.38e-01 100.0% 77.5%
3534592 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 22.0 3.30e-01 84.7% 81.8%
3492759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.48e-01 89.3% 78.7%
5033471 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 40.0 4.41e-01 85.5% 92.4%
5084039 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.55 48.0 3.74e-01 98.5% 94.1%
1412232 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.54 49.0 3.64e-01 100.0% 98.8%
874 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.54 41.0 4.12e-01 88.5% 77.9%
4099548 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.54 44.0 4.22e-01 87.0% 92.7%
3589839 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.53 48.0 3.59e-01 100.0% 91.6%
3943954 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.52 47.0 3.73e-01 100.0% 95.6%
3976326 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.52 44.0 3.95e-01 90.1% 99.4%
4009646 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.52 43.0 3.36e-01 90.1% 71.5%
3964096 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.52 42.0 3.86e-01 87.0% 80.0%
None — 0.52 42.0 4.08e-01 87.0% 91.2%
4109711 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 46.0 3.65e-01 100.0% 83.7%
3978431 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.51 42.0 3.41e-01 89.3% 83.2%
D3 medium residues 103-204
PDB
Domain cluster: rep: MW824397.1__QZI91684.1__PODOV088v1_p0023__00023__D41-137
D4 medium residues 219-273
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.67 48.0 4.82e-01 94.5% 76.4%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 39.0 2.87e-01 98.2% 22.9%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.62 43.0 4.70e-01 94.5% 97.7%
6xwlE02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 51.0 3.89e-01 96.4% 46.0%
2j9lF01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.59 40.0 3.76e-01 72.7% 65.8%
3fioA00 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.59 48.0 4.56e-01 96.4% 90.0%
2bdqA00 3.20.20.380 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain 0.57 45.0 3.07e-01 100.0% 23.4%
3kh5A02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 45.0 3.50e-01 96.4% 55.1%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 45.0 3.98e-01 94.5% 60.5%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.54 44.0 3.71e-01 92.7% 92.9%
3gbyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 43.0 3.41e-01 92.7% 48.0%
1vr9A02 3.10.20.750 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 4.33e-01 92.7% 98.2%
1tfrA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 44.0 3.08e-01 100.0% 96.6%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 42.0 3.36e-01 96.4% 48.5%
1z2nX01 3.40.50.10820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Inositol 1,3,4-trisphosphate 5/6-kinase domain 0.53 36.0 3.03e-01 70.9% 81.2%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 2.83e-01 90.9% 54.2%
1qlmA02 3.30.1030.10 Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 0.52 41.0 2.88e-01 89.1% 76.8%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 41.0 3.43e-01 98.2% 50.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057744 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.73 56.0 3.93e-01 96.4% 27.1%
3811636 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.65 48.0 3.47e-01 80.0% 31.2%
4989431 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.63 41.0 2.75e-01 100.0% 16.7%
4031100 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.61 45.0 4.25e-01 81.8% 71.4%
3434981 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 47.0 4.32e-01 87.3% 77.3%
5050019 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.59 48.0 3.46e-01 98.2% 82.8%
5066595 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.58 40.0 2.84e-01 74.5% 32.0%
4992758 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.58 40.0 2.73e-01 100.0% 18.2%
3282922 7565.1.1.0 ↗ a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.57 39.0 3.27e-01 94.5% 40.0%
3364890 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 45.0 3.33e-01 96.4% 42.8%
5078936 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 46.0 3.59e-01 96.4% 54.8%
4943032 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.56 45.0 3.20e-01 94.5% 29.7%
3691979 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.54 39.0 2.65e-01 100.0% 19.1%
3265359 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 41.0 2.46e-01 96.4% 10.8%
4930058 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 43.0 3.33e-01 92.7% 40.7%
3284809 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 43.0 3.48e-01 100.0% 71.2%
4145376 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.52 41.0 3.27e-01 94.5% 44.6%
4949071 869.1.1.1 ↗ a+b complex topology › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › MCH 0.51 40.0 2.63e-01 92.7% 54.9%
4983375 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 40.0 3.37e-01 98.2% 51.3%
4284200 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 40.0 3.21e-01 96.4% 47.4%
4943167 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 37.0 2.62e-01 87.3% 62.2%
3618122 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.50 38.0 2.72e-01 87.3% 43.6%
3271552 207.1.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.50 42.0 2.61e-01 98.2% 15.4%
D5 medium residues 326-378_402-422
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.58 37.0 3.47e-01 100.0% 49.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3668060 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.63 44.0 3.13e-01 100.0% 22.4%
5034990 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.61 46.0 2.93e-01 100.0% 16.1%
3257166 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.54 43.0 2.87e-01 100.0% 21.0%
D6 medium residues 448-533_555-657
PDB