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MW960031.1__QWY83149.1__X__00031

Bact-Vir

MW960031.1__QWY83149.1__X__00031

Identity

Accession:
MW960031 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rigallicvirus› Rhizobium_phage_RHph_X2_24

TaxID: 2836082

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-119
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23812.2 best Phage_TAC_18 29.6 8.10e-07 74.7% 71.2%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 49.0 5.00e-01 87.3% 68.8%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 54.0 5.44e-01 78.5% 80.8%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 48.0 5.45e-01 74.7% 91.7%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.69 41.0 4.73e-01 72.2% 81.0%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 39.0 3.56e-01 86.1% 43.7%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 47.0 4.68e-01 100.0% 70.4%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 53.0 4.07e-01 86.1% 38.0%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 49.0 4.48e-01 77.2% 94.3%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.67 51.0 4.85e-01 82.3% 74.5%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.67 53.0 4.93e-01 84.8% 87.6%
3dkrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 57.0 3.98e-01 93.7% 61.8%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 49.0 4.68e-01 78.5% 68.9%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.65 51.0 3.80e-01 82.3% 48.1%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.63 45.0 3.88e-01 93.7% 47.2%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 51.0 4.17e-01 88.6% 94.5%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.62 41.0 3.55e-01 82.3% 42.4%
1m7wA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.62 54.0 3.92e-01 96.2% 38.1%
4acoA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 47.0 4.24e-01 83.5% 75.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.12e-01 81.0% 72.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 47.0 4.63e-01 84.8% 86.9%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.59 47.0 3.59e-01 88.6% 41.9%
2e9xB02 1.20.58.1020 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 52.0 4.63e-01 97.5% 96.3%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.57 36.0 2.80e-01 75.9% 26.4%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.56 46.0 3.76e-01 92.4% 63.9%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 43.0 4.20e-01 84.8% 84.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.54 46.0 4.48e-01 91.1% 92.9%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 41.0 3.32e-01 83.5% 45.8%
2yg8A01 1.10.1670.40 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › 0.53 41.0 3.84e-01 82.3% 82.1%
1bvp101 1.10.250.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 0.52 36.0 3.16e-01 72.2% 94.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4022295 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.76 57.0 4.42e-01 78.5% 67.5%
4382577 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.73 61.0 4.07e-01 89.9% 57.6%
54487 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.73 41.0 3.55e-01 88.6% 38.3%
3536813 1008.1.1.30 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › EVC2_like 0.72 53.0 3.07e-01 77.2% 9.6%
4195555 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 56.0 4.16e-01 100.0% 36.1%
3419147 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.71 52.0 4.97e-01 77.2% 95.6%
5081846 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.70 52.0 4.97e-01 77.2% 67.8%
3519620 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 49.0 4.34e-01 72.2% 68.2%
5036615 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.69 48.0 4.52e-01 72.2% 63.2%
1879330 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.67 44.0 4.21e-01 78.5% 58.2%
3726731 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.67 56.0 4.54e-01 89.9% 87.6%
3178031 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.67 48.0 4.40e-01 74.7% 95.0%
2774528 3286.1.1.1 ↗ alpha complex topology › Glypican insertion domain › Glypican insertion domain › Glypican insertion domain › Glypican 0.67 57.0 4.63e-01 93.7% 72.6%
5026085 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 55.0 4.95e-01 89.9% 100.0%
3738109 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.66 47.0 4.49e-01 75.9% 95.8%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.66 46.0 4.55e-01 72.2% 85.5%
3200876 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.65 48.0 4.57e-01 75.9% 95.6%
3740666 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 38.0 2.67e-01 82.3% 19.7%
3533358 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 44.0 4.20e-01 73.4% 82.1%
5066728 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.63 49.0 4.84e-01 82.3% 76.5%
4015974 148.1.3.14 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC4_C 0.62 49.0 4.26e-01 89.9% 69.2%
3243067 101.1.2.577 ↗ alpha arrays › HTH › HTH › winged helix domain › SPK 0.61 51.0 4.53e-01 92.4% 82.6%
4648941 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.61 47.0 3.65e-01 81.0% 45.6%
3251599 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.93e-01 92.4% 97.3%
3600609 3069.1.1.0 ↗ alpha arrays › BART › BART › BART 0.58 48.0 4.14e-01 96.2% 90.4%
4972154 604.12.1.135 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 0.57 49.0 4.50e-01 92.4% 86.0%
140810 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.57 50.0 3.85e-01 98.7% 48.6%
3740527 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.56 48.0 3.14e-01 98.7% 81.8%
4625218 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.55 42.0 3.28e-01 82.3% 40.0%
4624818 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.54 45.0 4.35e-01 94.9% 100.0%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.54 36.0 3.52e-01 75.9% 60.0%
3554695 109.4.1.1503 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rod_C 0.51 38.0 2.81e-01 79.7% 32.1%