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MW960032.1__QWY83273.1__X__00067

Bact-Vir

MW960032.1__QWY83273.1__X__00067

Identity

Accession:
MW960032 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-62
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 62.0 4.80e-01 100.0% 44.4%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.68 56.0 5.13e-01 98.2% 68.8%
2ltjA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.68 46.0 3.73e-01 72.7% 55.0%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.66 44.0 3.27e-01 70.9% 67.3%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 47.0 3.29e-01 81.8% 24.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 48.0 3.86e-01 100.0% 38.8%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.64 39.0 3.94e-01 100.0% 60.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 51.0 4.34e-01 89.1% 89.1%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 3.52e-01 100.0% 27.8%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.34e-01 100.0% 30.0%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 49.0 3.87e-01 100.0% 41.8%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.61 50.0 3.73e-01 100.0% 38.4%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.88e-01 100.0% 43.1%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.61 49.0 3.63e-01 98.2% 38.2%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.60 42.0 4.51e-01 83.6% 100.0%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.59 47.0 3.58e-01 98.2% 42.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 4.13e-01 100.0% 60.2%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 2.90e-01 96.4% 14.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.58 45.0 3.68e-01 100.0% 41.9%
4gdxB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.58 45.0 3.15e-01 87.3% 52.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 48.0 3.82e-01 100.0% 44.8%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 3.50e-01 100.0% 38.5%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 38.0 2.94e-01 70.9% 93.7%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.56 48.0 4.16e-01 98.2% 68.2%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.56 49.0 3.97e-01 100.0% 52.3%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 47.0 4.10e-01 98.2% 69.3%
2ozgA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.56 35.0 3.02e-01 87.3% 37.2%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 41.0 2.82e-01 83.6% 88.0%
5lddC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 3.41e-01 98.2% 54.8%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.66e-01 96.4% 51.6%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 37.0 3.16e-01 72.7% 72.5%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 43.0 3.14e-01 92.7% 56.2%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.12e-01 89.1% 68.5%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.14e-01 100.0% 40.3%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 45.0 3.37e-01 100.0% 57.5%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 47.0 4.31e-01 100.0% 74.3%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.90e-01 98.2% 83.7%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.73e-01 100.0% 92.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 39.0 3.49e-01 80.0% 56.4%
6fgcA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.52 44.0 3.17e-01 100.0% 44.8%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 45.0 2.84e-01 100.0% 82.4%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.43e-01 100.0% 87.8%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.16e-01 100.0% 34.2%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.35e-01 100.0% 90.2%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 2.84e-01 78.2% 88.2%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 41.0 2.95e-01 100.0% 76.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927790 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.83 55.0 6.05e-01 96.4% 84.4%
3390004 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 58.0 4.65e-01 100.0% 44.5%
4991488 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.71 47.0 3.30e-01 70.9% 23.0%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 53.0 4.50e-01 100.0% 48.4%
3516177 221.4.1.18 a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N 0.67 39.0 2.47e-01 100.0% 12.8%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.67 56.0 5.67e-01 98.2% 96.4%
3764969 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 4.22e-01 100.0% 46.2%
1234289 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.65 39.0 2.77e-01 100.0% 21.7%
3290300 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 52.0 4.59e-01 100.0% 61.2%
4027687 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.63 55.0 5.58e-01 96.4% 94.5%
4130753 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.63 50.0 3.11e-01 98.2% 14.3%
3979711 252.2.1.6 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.63 50.0 4.81e-01 98.2% 75.4%
4950192 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 49.0 4.38e-01 100.0% 58.8%
3570145 63.1.1.1 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.62 50.0 3.61e-01 90.9% 63.0%
3838723 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 49.0 3.57e-01 89.1% 66.1%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.62 53.0 4.08e-01 100.0% 41.5%
3216674 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 51.0 4.18e-01 100.0% 61.7%
3577911 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.62 51.0 3.87e-01 100.0% 36.6%
4967706 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 49.0 3.82e-01 100.0% 38.1%
3971883 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.61 43.0 2.64e-01 76.4% 24.1%
4617128 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.61 53.0 4.21e-01 100.0% 53.0%
4483987 374.1.1.2 few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › BssC_TutF 0.60 45.0 4.51e-01 92.7% 83.6%
4995163 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 50.0 3.35e-01 100.0% 22.9%
3390398 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 50.0 3.84e-01 100.0% 49.3%
4594466 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.59 52.0 3.81e-01 100.0% 46.7%
4937410 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.58 50.0 4.25e-01 100.0% 64.2%
3940020 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 47.0 3.71e-01 96.4% 46.9%
146718 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 46.0 3.52e-01 100.0% 35.5%
3963036 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.57 48.0 4.06e-01 100.0% 55.0%
3218188 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 44.0 3.49e-01 90.9% 80.0%
3497120 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 49.0 4.10e-01 100.0% 67.4%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 45.0 4.22e-01 100.0% 75.7%
3317848 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.55 49.0 3.00e-01 100.0% 26.1%
5044375 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.55 46.0 3.16e-01 100.0% 66.8%
5067357 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.55 46.0 3.10e-01 98.2% 79.2%
3938170 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.54 46.0 3.50e-01 100.0% 38.7%
3636596 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.13e-01 92.7% 92.0%
3954140 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 45.0 2.87e-01 98.2% 95.2%
3255797 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.59e-01 98.2% 78.3%
4595466 3572.1.1.2 a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.54 37.0 2.90e-01 90.9% 31.2%
4948799 281.1.1.0 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase 0.54 44.0 3.29e-01 94.5% 80.6%
3509056 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.54 43.0 3.47e-01 100.0% 42.4%
4846323 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 39.0 3.62e-01 78.2% 62.9%
5073154 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 47.0 3.30e-01 100.0% 52.0%
4928998 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 43.0 3.34e-01 98.2% 84.8%
3523656 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 2.98e-01 100.0% 45.7%
3765454 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.40e-01 96.4% 82.3%
6353 331.11.1.1 a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 0.52 39.0 2.99e-01 80.0% 35.5%
5074874 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 41.0 2.87e-01 87.3% 49.2%
4120507 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 38.0 3.29e-01 89.1% 46.3%
4975329 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 45.0 3.21e-01 100.0% 52.6%
4994515 264.1.1.9 beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.52 43.0 3.14e-01 100.0% 41.7%
4973410 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 41.0 3.18e-01 100.0% 45.6%
3352475 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.51 41.0 3.83e-01 98.2% 80.0%
4323154 2.1.1.341 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 0.50 40.0 3.37e-01 100.0% 88.7%