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MW960033.1QWY83350.1X__00039

Bact-Vir

MW960033.1__QWY83350.1__X__00039

Identity

Accession:: MW960033 ↗
Kingdom:: phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_X3_2

TaxID: 2836084

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-147_232-259

PDB

Domain cluster: rep: IMGVR_UViG_2529292733_000001-2529292733-2529763349__D7-188

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2iu5B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.65	43.0	4.24e-01	96.4%	61.6%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.61	40.0	4.73e-01	74.7%	99.1%
1u5pA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	27.0	3.27e-01	74.7%	63.0%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.55	38.0	4.34e-01	80.1%	98.3%
1tf5A04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.55	41.0	3.97e-01	76.5%	100.0%
2zy9A03	1.10.357.20	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain	0.55	44.0	4.34e-01	95.2%	81.0%
6zhiB02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	27.0	3.60e-01	93.4%	92.8%
1wp1B01	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.53	40.0	3.06e-01	76.5%	58.2%
4k7rA01	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.53	39.0	3.11e-01	76.5%	58.4%
5h5mA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.53	39.0	4.34e-01	94.6%	96.9%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.52	31.0	3.75e-01	95.2%	90.0%
8ex5A02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.52	42.0	3.85e-01	99.4%	65.3%
1h6gA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.50	36.0	4.07e-01	94.6%	98.4%
1ldjA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.50	32.0	3.73e-01	98.2%	90.4%
8hk0C01	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.50	30.0	3.18e-01	85.5%	63.3%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3303966	6108.1.1.11 ↗	alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N	0.67	62.0	4.13e-01	100.0%	31.0%
None	—		0.66	61.0	4.12e-01	100.0%	31.2%
4027540	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.61	50.0	5.14e-01	94.0%	91.3%
3559718	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.61	29.0	3.50e-01	73.5%	66.4%
4026473	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.61	50.0	5.10e-01	87.3%	92.5%
3279597	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.60	37.0	4.50e-01	85.5%	95.2%
3479807	5079.1.1.0 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain	0.60	52.0	4.88e-01	98.2%	76.5%
3924614	5079.1.1.1 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE	0.58	52.0	4.73e-01	100.0%	73.3%
None	—		0.58	42.0	4.06e-01	75.3%	90.0%
4024028	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.57	47.0	4.92e-01	97.0%	99.3%
3852821	5001.1.1.43 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R	0.56	40.0	3.39e-01	84.3%	42.5%
3971669	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.56	42.0	4.14e-01	76.5%	92.0%
None	—		0.55	40.0	3.25e-01	84.3%	39.0%
5064992	601.19.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein	0.55	41.0	3.17e-01	77.1%	74.5%
4024699	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.55	43.0	4.54e-01	81.9%	94.5%
4025853	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.54	43.0	4.29e-01	91.6%	83.5%
3244996	5001.1.1.63 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab	0.54	42.0	3.41e-01	83.7%	43.5%
3710920	5079.1.1.1 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE	0.53	42.0	4.19e-01	91.0%	80.6%
3240061	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.53	41.0	3.17e-01	81.3%	72.5%
3400732	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.53	34.0	3.91e-01	75.9%	89.2%
3750000	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.51	31.0	3.77e-01	70.5%	94.3%
3929285	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.51	31.0	3.88e-01	71.1%	100.0%
4029469	601.1.2.140 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF30077	0.51	40.0	3.50e-01	82.5%	92.3%
3220229	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.51	33.0	3.72e-01	74.1%	87.5%
3541655	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.51	32.0	3.72e-01	72.9%	87.5%
3757568	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.50	32.0	3.86e-01	72.9%	100.0%

D2 high residues 153-230

PDB

Domain cluster: rep: OM638088.1__UWJ04729.1__CUB19_gp9__00009__D133-210

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hszA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.68	37.0	3.81e-01	82.1%	54.7%
1i5nB00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.68	52.0	4.53e-01	84.6%	64.5%
4ol8B03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.65	51.0	4.93e-01	87.2%	75.6%
3vw4A01	1.10.340.50	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 ›	0.60	36.0	3.46e-01	85.9%	51.1%
3mvpA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	45.0	3.69e-01	82.1%	79.2%
6bfnB02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.59	44.0	3.37e-01	83.3%	92.1%
7d5qA01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.55	45.0	3.50e-01	92.3%	96.2%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.52	40.0	3.87e-01	85.9%	100.0%
4unfA02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.52	37.0	3.34e-01	76.9%	79.5%
3i5tB01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.51	42.0	3.34e-01	91.0%	48.2%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4329065	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.59	40.0	3.89e-01	89.7%	63.5%
4034500	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.59	50.0	3.45e-01	100.0%	93.1%
3922692	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.58	46.0	4.11e-01	87.2%	91.3%
3621441	5045.1.1.0 ↗	alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A	0.58	49.0	3.70e-01	97.4%	63.8%
3218352	5001.1.1.69 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srd	0.57	46.0	3.15e-01	93.6%	83.7%
3967462	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.54	41.0	3.10e-01	83.3%	57.1%
4970935	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	40.0	3.05e-01	82.1%	64.5%
4149518	160.1.1.1 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C	0.53	40.0	3.45e-01	83.3%	66.9%
5046162	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.52	38.0	2.88e-01	87.2%	33.3%
4038214	247.1.1.5 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C	0.52	39.0	2.80e-01	83.3%	43.9%
4989561	148.1.1.4 ↗	alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF	0.51	44.0	3.57e-01	96.2%	73.8%
3476205	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.51	39.0	2.95e-01	84.6%	54.5%
3282854	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	42.0	3.25e-01	100.0%	88.6%
4043364	160.1.1.1 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C	0.50	38.0	3.21e-01	83.3%	62.9%

D3 high residues 266-334

PDB

Domain cluster: rep: IMGVR_UViG_3300045988_178991-3300045988-Ga0495776_136811_45785_46564__D181-244

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jjsC00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	50.0	4.27e-01	100.0%	61.7%
2ibgA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	40.0	3.54e-01	100.0%	53.9%
5oj2B05	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	39.0	3.59e-01	100.0%	59.4%
2dmkA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	41.0	3.64e-01	100.0%	60.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4032640	601.19.1.3 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F	0.83	63.0	3.98e-01	98.6%	17.7%
3946757	601.19.1.3 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F	0.77	59.0	4.09e-01	94.2%	25.3%
3215641	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	39.0	3.43e-01	98.6%	52.4%
3924191	284.1.1.1 ↗	a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C	0.50	41.0	3.43e-01	95.7%	66.4%
4030574	929.1.1.0 ↗	beta duplicates or obligate multimers › Resistin › Resistin › Resistin	0.50	36.0	3.44e-01	95.7%	64.3%