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MW960033.1QWY83364.1X__00053

Bact-Vir

MW960033.1__QWY83364.1__X__00053

Identity

Accession:: MW960033 ↗
Kingdom:: phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_X3_2

TaxID: 2836084

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 243-309

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01471.24 best	PG_binding_1	24.1	4.60e-05	86.6%	59.7%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bkhA01	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.88	75.0	6.82e-01	94.0%	70.9%
4c2dA02	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.88	78.0	7.09e-01	94.0%	74.1%
4bolA02	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.88	74.0	6.91e-01	92.5%	75.0%
4g54A02	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.82	68.0	6.65e-01	92.5%	83.3%
1lbuA01	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.80	69.0	6.39e-01	94.0%	81.0%
7aj9A01	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.77	63.0	6.33e-01	89.6%	91.0%
1ck7A01	3.40.390.10	Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain)	0.75	65.0	4.43e-01	97.0%	27.2%
6z74C02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.59	42.0	3.21e-01	74.6%	56.6%
4ar9A02	1.10.390.20	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 ›	0.55	40.0	3.20e-01	77.6%	66.2%
3dplC03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	32.0	3.05e-01	80.6%	50.6%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.52	40.0	3.69e-01	85.1%	88.5%
6uglB02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	35.0	3.76e-01	79.1%	82.8%
2oezA02	1.10.3900.10	Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like	0.51	36.0	2.87e-01	77.6%	88.3%
4r2bA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	41.0	3.03e-01	92.5%	58.1%
3a8rA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.50	44.0	3.74e-01	100.0%	61.1%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1877329	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.94	78.0	7.43e-01	89.6%	76.3%
4218606	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.90	77.0	7.11e-01	92.5%	73.5%
3589440	144.1.1.7 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PF30262	0.89	75.0	5.73e-01	89.6%	42.9%
4055540	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.89	74.0	7.34e-01	89.6%	85.5%
3060287	144.1.1.0 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like	0.88	73.0	7.01e-01	89.6%	78.7%
4312892	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.88	72.0	7.57e-01	92.5%	96.7%
1086899	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.88	74.0	7.00e-01	92.5%	76.9%
4117418	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.87	71.0	7.48e-01	89.6%	96.7%
3263339	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.86	74.0	7.14e-01	92.5%	82.7%
4380775	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.86	73.0	5.06e-01	94.0%	30.5%
1904136	144.1.1.0 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like	0.84	72.0	6.96e-01	92.5%	84.0%
3987122	144.1.1.1 ↗	alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1	0.77	65.0	6.08e-01	92.5%	76.2%
4970900	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.65	53.0	4.89e-01	92.5%	92.2%
3953156	601.3.1.5 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Alpha-E	0.61	44.0	3.34e-01	76.1%	46.5%
3710677	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.56	40.0	3.28e-01	74.6%	60.8%
4053614	2484.1.1.16 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII	0.51	41.0	2.87e-01	91.0%	80.7%

D2 high residues 311-399

PDB

D3 medium residues 1-65_161-235

PDB

Domain cluster: rep: MT584811.1__QLB38235.1__phiGT1_23__00023__D3-62_166-220

D4 medium residues 66-160

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2cjlA02	3.30.20.10	Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2	0.66	40.0	4.85e-01	100.0%	95.1%
2hekA01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.56	45.0	3.32e-01	89.5%	75.4%
2z73B01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	40.0	2.81e-01	84.2%	51.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1147708	235.1.1.2 ↗	a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19	0.90	87.0	6.44e-01	100.0%	46.2%