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MW960033.1__QWY83380.1__X__00069

Bact-Vir

MW960033.1__QWY83380.1__X__00069

Identity

Accession:
MW960033 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_X3_2

TaxID: 2836084

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-65
PDB
Domain cluster: rep: NC_048776.1__YP_009847545.1__HWC32_gp064__00064__D4-57
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13280.13 best WYL 22.5 1.30e-04 100.0% 71.4%
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.74e-01 100.0% 62.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 4.70e-01 100.0% 61.6%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 49.0 5.02e-01 100.0% 78.2%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.21e-01 100.0% 92.2%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.95e-01 100.0% 88.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 50.0 5.27e-01 100.0% 96.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.66 46.0 4.70e-01 100.0% 77.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.11e-01 100.0% 92.5%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.84e-01 100.0% 66.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.05e-01 100.0% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.84e-01 100.0% 81.4%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.24e-01 100.0% 96.2%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.30e-01 100.0% 48.7%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.19e-01 100.0% 87.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.89e-01 100.0% 70.4%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.22e-01 100.0% 47.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 46.0 4.77e-01 100.0% 90.4%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 53.0 4.62e-01 100.0% 80.0%
4ft4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 44.0 2.74e-01 77.6% 12.1%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 41.0 3.25e-01 72.4% 32.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.60e-01 100.0% 79.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.76e-01 100.0% 81.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.71e-01 100.0% 74.3%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 4.59e-01 100.0% 69.6%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 4.02e-01 87.9% 83.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.26e-01 100.0% 52.8%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.74e-01 100.0% 76.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.93e-01 100.0% 90.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.90e-01 100.0% 83.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 5.02e-01 100.0% 89.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.22e-01 100.0% 98.1%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.87e-01 100.0% 93.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.71e-01 100.0% 79.2%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 3.84e-01 100.0% 93.9%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.57 45.0 3.60e-01 86.2% 54.8%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 40.0 3.63e-01 77.6% 86.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 3.94e-01 94.8% 82.2%
2n88A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 3.87e-01 77.6% 69.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 3.25e-01 94.8% 87.2%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.40e-01 100.0% 80.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 43.0 4.41e-01 94.8% 89.3%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 41.0 3.34e-01 84.5% 78.1%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 41.0 3.55e-01 82.8% 91.0%
1lv9A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.87e-01 89.7% 71.9%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 43.0 3.55e-01 91.4% 73.1%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.38e-01 100.0% 91.2%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 43.0 4.48e-01 89.7% 98.1%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.54 43.0 3.31e-01 87.9% 62.2%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 43.0 3.24e-01 91.4% 92.9%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.75e-01 98.3% 76.9%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 3.31e-01 100.0% 66.5%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.24e-01 84.5% 83.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 4.05e-01 96.6% 81.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 41.0 3.93e-01 100.0% 80.0%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.47e-01 100.0% 62.8%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 35.0 3.55e-01 94.8% 73.7%
1imvA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 41.0 3.11e-01 98.3% 69.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.82e-01 100.0% 81.2%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 42.0 3.59e-01 93.1% 85.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.96 81.0 6.51e-01 100.0% 51.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.96 80.0 6.71e-01 100.0% 56.7%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.95 80.0 6.86e-01 100.0% 60.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.94 78.0 6.47e-01 100.0% 53.7%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.93 77.0 6.27e-01 100.0% 51.0%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.91 78.0 6.09e-01 100.0% 47.3%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 70.0 5.99e-01 100.0% 56.7%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 56.0 5.60e-01 100.0% 78.3%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.82e-01 100.0% 78.5%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.67e-01 100.0% 96.0%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 4.86e-01 100.0% 53.7%
3770801 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.67 58.0 4.99e-01 100.0% 69.5%
2579126 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.67 50.0 3.71e-01 79.3% 56.2%
5001168 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.67 49.0 4.13e-01 79.3% 81.0%
4882592 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.67 49.0 3.68e-01 79.3% 55.5%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.24e-01 100.0% 83.1%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.86e-01 100.0% 71.4%
3530890 2004.1.1.402 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT 0.66 58.0 5.09e-01 100.0% 79.5%
3598854 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 49.0 3.69e-01 79.3% 57.1%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.66 53.0 4.41e-01 100.0% 50.5%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.65 53.0 4.37e-01 100.0% 49.1%
5028505 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.65 49.0 3.70e-01 81.0% 58.6%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.64 47.0 3.68e-01 77.6% 68.8%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 55.0 4.75e-01 100.0% 63.2%
3498558 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.62 53.0 4.01e-01 100.0% 40.0%
3245735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.32e-01 100.0% 51.3%
3939175 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.62 53.0 4.00e-01 100.0% 40.0%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.66e-01 100.0% 74.4%
3738161 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.62 53.0 4.20e-01 100.0% 48.0%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.62 51.0 4.19e-01 100.0% 48.7%
3451173 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.27e-01 100.0% 57.8%
3938484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.05e-01 100.0% 46.7%
4235293 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.20e-01 100.0% 73.9%
3691620 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.60 51.0 4.17e-01 100.0% 66.1%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.60 50.0 4.36e-01 100.0% 60.0%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.59 51.0 4.62e-01 100.0% 71.2%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.59 51.0 4.31e-01 100.0% 57.0%
3252725 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 51.0 4.28e-01 100.0% 56.2%
3423334 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 52.0 4.02e-01 100.0% 44.6%
3184389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 3.62e-01 100.0% 46.3%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.64e-01 100.0% 82.9%
3963855 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.58 42.0 2.90e-01 79.3% 25.3%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.58 49.0 4.60e-01 100.0% 89.3%
3661025 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.58 50.0 4.07e-01 100.0% 53.0%
4965392 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.57 37.0 3.95e-01 70.7% 76.0%
3213215 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 3.93e-01 100.0% 49.6%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 48.0 4.53e-01 100.0% 86.7%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 3.99e-01 100.0% 50.4%
3334867 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 43.0 3.84e-01 100.0% 58.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.54 42.0 4.13e-01 100.0% 80.0%
3378383 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 4.14e-01 86.2% 100.0%
4458125 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.54 43.0 2.77e-01 96.6% 43.2%
4142320 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.53 45.0 2.80e-01 96.6% 18.8%
5041097 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.53 43.0 4.39e-01 89.7% 98.2%
2332800 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.52 39.0 2.50e-01 84.5% 41.4%
3594576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.65e-01 98.3% 52.7%
3378386 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.52 43.0 2.79e-01 96.6% 20.7%
3995204 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.51 35.0 3.48e-01 72.4% 69.2%
3801207 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.51 39.0 2.39e-01 87.9% 66.3%
3264469 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.51 43.0 3.88e-01 100.0% 70.6%
3234295 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.51 41.0 3.47e-01 100.0% 51.4%