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MW960037.1__QWY83571.1__X__00017

Bact-Vir

MW960037.1__QWY83571.1__X__00017

Identity

Accession:
MW960037 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_X2_26

TaxID: 2836080

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-99
PDB
Domain cluster: rep: MK448718.1__QBX16507.1__Javan253_0051__00051__D9-107
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11836.15 best Phage_TAC_11 83.0 1.90e-23 100.0% 92.8%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.67 45.0 3.89e-01 75.8% 43.7%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 40.0 4.18e-01 90.5% 75.9%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 43.0 4.51e-01 83.2% 85.1%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 44.0 3.96e-01 84.2% 79.7%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 44.0 4.09e-01 85.3% 96.8%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.55 41.0 2.79e-01 78.9% 83.3%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.55 43.0 4.37e-01 83.2% 89.0%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 44.0 3.11e-01 87.4% 85.4%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 41.0 3.77e-01 84.2% 94.6%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.52 39.0 3.26e-01 81.1% 82.8%
3r1vA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 45.0 4.21e-01 100.0% 99.2%
4q65A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 40.0 2.64e-01 83.2% 86.5%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 44.0 3.89e-01 95.8% 99.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044794 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.55 35.0 4.08e-01 83.2% 93.8%
3724513 509.1.1.13 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.55 36.0 3.97e-01 98.9% 85.3%
3210555 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 37.0 2.54e-01 100.0% 20.0%
3961148 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 26.0 2.48e-01 85.3% 38.3%
4840 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.51 43.0 3.86e-01 95.8% 99.3%
3919601 7061.1.1.0 ↗ few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module 0.51 33.0 3.65e-01 76.8% 84.0%
3789554 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 39.0 4.00e-01 81.1% 85.6%
4141107 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.50 32.0 3.46e-01 83.2% 76.2%
D2 high residues 125-186
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.69 50.0 3.52e-01 77.4% 78.1%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 41.0 3.84e-01 71.0% 57.0%
6kjoA01 1.20.920.60 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.52 38.0 3.05e-01 79.0% 62.9%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 40.0 3.13e-01 91.9% 76.6%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.51 41.0 3.55e-01 100.0% 67.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3496492 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 50.0 3.33e-01 98.4% 61.7%
4931231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 51.0 3.55e-01 98.4% 95.5%
3631135 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.57 45.0 4.33e-01 85.5% 81.4%
4961843 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 3.32e-01 96.8% 64.0%
5070866 632.6.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.51 39.0 3.80e-01 83.9% 85.7%
3419122 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 42.0 3.64e-01 91.9% 84.2%