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MW960037.1__QWY83607.1__X__00053

Bact-Vir

MW960037.1__QWY83607.1__X__00053

Identity

Accession:
MW960037 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_X2_26

TaxID: 2836080

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-68
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 36.0 2.49e-01 96.8% 16.3%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.63 30.0 2.49e-01 98.4% 23.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 40.0 3.18e-01 88.9% 31.5%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 4.46e-01 85.7% 97.4%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.24e-01 81.0% 71.9%
1sqiA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 33.0 2.47e-01 73.0% 19.8%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 40.0 3.70e-01 81.0% 54.3%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 4.00e-01 82.5% 92.1%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 40.0 3.48e-01 73.0% 86.5%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 35.0 2.70e-01 93.7% 25.0%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 4.06e-01 87.3% 92.4%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.88e-01 82.5% 96.6%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.18e-01 77.8% 78.2%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 40.0 3.27e-01 88.9% 67.6%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.54e-01 82.5% 86.5%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 44.0 2.73e-01 100.0% 55.4%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 38.0 3.16e-01 84.1% 59.8%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.30e-01 88.9% 49.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 32.0 3.11e-01 71.4% 54.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5084021 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.76 33.0 2.77e-01 93.7% 26.5%
3614205 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 54.0 4.13e-01 90.5% 34.3%
3247792 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.68 38.0 3.04e-01 90.5% 29.2%
3889863 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.66 39.0 3.09e-01 87.3% 30.8%
4234563 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 45.0 4.20e-01 71.4% 97.4%
3300200 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 33.0 2.58e-01 96.8% 22.2%
3444419 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 36.0 3.05e-01 90.5% 36.0%
3248573 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 56.0 4.02e-01 100.0% 38.9%
4677730 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.62 43.0 4.30e-01 71.4% 100.0%
3997935 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 47.0 3.95e-01 81.0% 74.3%
3409951 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.62 38.0 2.81e-01 93.7% 26.9%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 44.0 3.69e-01 77.8% 75.0%
4473605 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.59 44.0 4.10e-01 82.5% 81.9%
3675614 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.58 45.0 3.40e-01 87.3% 36.9%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.57 40.0 3.63e-01 81.0% 51.6%
3943722 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.56 50.0 3.01e-01 100.0% 54.9%
3398317 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 43.0 3.20e-01 87.3% 58.1%
3422764 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.54 38.0 4.22e-01 76.2% 100.0%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.63e-01 81.0% 61.2%
3961045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.61e-01 84.1% 100.0%
3409778 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 42.0 3.37e-01 87.3% 72.3%
4929746 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 43.0 3.24e-01 88.9% 44.3%
4564040 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 43.0 3.31e-01 88.9% 48.9%
3859971 223.1.1.108 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.52 45.0 2.71e-01 96.8% 72.4%
4586383 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 33.0 2.44e-01 81.0% 24.0%
5044484 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.51 40.0 3.67e-01 92.1% 92.5%
3519635 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 41.0 3.45e-01 88.9% 60.0%
3877917 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.51 35.0 2.83e-01 76.2% 35.0%
3583546 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 40.0 3.21e-01 88.9% 68.9%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.50 34.0 3.35e-01 73.0% 65.2%
3304245 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.50 43.0 3.05e-01 93.7% 75.1%
4945806 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 41.0 3.34e-01 90.5% 55.0%