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MW960037.1__QWY83640.1__X__00086

Bact-Vir

MW960037.1__QWY83640.1__X__00086

Identity

Accession:
MW960037 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_X2_26

TaxID: 2836080

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-82
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yn3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.76 45.0 4.00e-01 100.0% 42.3%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.65 45.0 3.25e-01 78.0% 85.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.97e-01 100.0% 95.8%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.60 47.0 3.42e-01 100.0% 30.8%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.60 49.0 3.93e-01 100.0% 50.4%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.59 47.0 3.64e-01 100.0% 68.8%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 47.0 3.88e-01 98.0% 47.5%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 47.0 4.50e-01 98.0% 90.3%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 48.0 3.40e-01 100.0% 82.5%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 48.0 4.15e-01 100.0% 61.4%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.56 46.0 3.84e-01 96.0% 52.1%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.62e-01 100.0% 49.4%
1mkfA01 2.60.40.1330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.12e-01 100.0% 24.1%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.76e-01 92.0% 25.4%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.56 42.0 2.80e-01 88.0% 94.0%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.62e-01 94.0% 94.2%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 43.0 4.22e-01 94.0% 80.0%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 46.0 4.11e-01 98.0% 100.0%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.25e-01 98.0% 91.8%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 2.89e-01 96.0% 55.9%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 41.0 2.63e-01 90.0% 78.3%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.52 44.0 3.88e-01 100.0% 97.4%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.26e-01 86.0% 49.0%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.52 36.0 2.69e-01 80.0% 50.3%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 2.77e-01 86.0% 58.8%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 43.0 2.84e-01 100.0% 91.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991413 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.65 47.0 5.15e-01 100.0% 97.5%
4960280 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.08e-01 86.0% 45.3%
3963812 3170.1.1.0 ↗ a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 0.63 47.0 3.64e-01 100.0% 36.4%
3844612 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.62 40.0 3.87e-01 100.0% 55.0%
1405101 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.62 48.0 4.82e-01 100.0% 90.0%
4385582 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.61 47.0 3.54e-01 88.0% 53.3%
145704 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 47.0 4.53e-01 100.0% 79.3%
3234632 389.1.2.9 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.59 48.0 4.04e-01 94.0% 81.1%
3270724 206.1.3.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.59 47.0 3.18e-01 96.0% 72.8%
4245466 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 45.0 4.51e-01 98.0% 88.0%
3918819 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 50.0 3.94e-01 100.0% 45.7%
4829603 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.57 47.0 4.24e-01 100.0% 67.1%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 49.0 4.26e-01 100.0% 83.5%
3616247 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.80e-01 98.0% 63.3%
4963111 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 41.0 4.30e-01 94.0% 93.3%
3217266 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.56 46.0 4.14e-01 98.0% 77.3%
3926791 11.1.1.854 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7583 0.56 47.0 3.85e-01 100.0% 50.0%
3457638 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.55 43.0 3.81e-01 100.0% 77.8%
3583261 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.55 42.0 3.98e-01 92.0% 100.0%
4112791 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 43.0 4.30e-01 96.0% 92.0%
5055761 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.54 42.0 3.12e-01 88.0% 83.6%
4927385 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 41.0 4.18e-01 94.0% 94.0%
3393303 284.1.1.5 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.53 44.0 3.16e-01 98.0% 95.2%
4049910 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.53 39.0 3.99e-01 94.0% 100.0%
3526484 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.52 34.0 2.69e-01 100.0% 26.4%
None — 0.52 40.0 3.75e-01 100.0% 65.7%
4537840 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 40.0 4.06e-01 96.0% 94.0%
5040738 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.51 43.0 4.13e-01 98.0% 95.0%
3598793 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 43.0 3.37e-01 100.0% 41.7%
3416079 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 36.0 2.91e-01 78.0% 81.9%