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MW980061.1__QXV73543.1__X__00009

Bact-Vir

MW980061.1__QXV73543.1__X__00009

Identity

Accession:
MW980061 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Rhizobium_phage_RHph_X2_30

TaxID: 2836126

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.73 44.0 3.22e-01 73.0% 24.3%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.72 39.0 4.14e-01 71.6% 58.8%
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.65 45.0 3.63e-01 71.6% 78.6%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 45.0 3.33e-01 73.0% 55.4%
2nn6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.64 54.0 3.54e-01 100.0% 22.7%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 4.18e-01 73.0% 84.1%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 45.0 3.15e-01 77.0% 31.3%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 54.0 4.19e-01 100.0% 94.2%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 46.0 3.91e-01 100.0% 48.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 52.0 4.01e-01 100.0% 87.6%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.41e-01 74.3% 62.6%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.59 47.0 4.16e-01 91.9% 81.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 48.0 3.78e-01 91.9% 75.6%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 41.0 2.84e-01 74.3% 38.3%
2jjqA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 3.70e-01 85.1% 66.9%
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 41.0 3.86e-01 75.7% 79.6%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.57 40.0 2.84e-01 74.3% 28.6%
6bbtB01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.18e-01 77.0% 37.9%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 2.88e-01 100.0% 24.8%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 48.0 3.80e-01 100.0% 74.5%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.56 43.0 4.19e-01 100.0% 75.6%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 49.0 4.29e-01 100.0% 99.1%
5h8iI00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 38.0 2.52e-01 73.0% 18.1%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 41.0 2.94e-01 85.1% 46.1%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.54 49.0 4.49e-01 100.0% 85.3%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 39.0 3.88e-01 95.9% 74.4%
4ijaB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 49.0 3.76e-01 100.0% 87.3%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 47.0 3.92e-01 97.3% 68.5%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.52 47.0 3.92e-01 100.0% 97.7%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.85e-01 85.1% 92.3%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 3.67e-01 75.7% 88.5%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 46.0 3.32e-01 100.0% 34.6%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.49e-01 87.8% 94.4%
3psfA04 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.52 45.0 3.53e-01 100.0% 83.5%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.51 45.0 3.37e-01 100.0% 44.6%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 38.0 2.80e-01 79.7% 100.0%
5jr6A02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 44.0 3.49e-01 97.3% 77.6%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.17e-01 100.0% 71.3%
2lm3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 42.0 3.18e-01 98.6% 57.6%
3kb5A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 43.0 3.28e-01 100.0% 54.9%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.50 42.0 3.76e-01 97.3% 67.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4334199 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.83 41.0 3.34e-01 70.3% 28.8%
4031833 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.77 39.0 4.35e-01 71.6% 61.7%
3287702 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.72 39.0 3.36e-01 74.3% 34.8%
3192378 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.71 50.0 4.36e-01 91.9% 51.4%
2390064 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.70 40.0 2.92e-01 73.0% 21.8%
3700405 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 45.0 4.56e-01 95.9% 70.7%
5033562 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 54.0 5.26e-01 100.0% 82.5%
389943 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 54.0 5.01e-01 100.0% 71.7%
3238130 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.64 48.0 3.85e-01 78.4% 84.1%
3635669 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.63 45.0 3.87e-01 89.2% 47.8%
3727451 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.63 49.0 4.43e-01 90.5% 63.2%
3504590 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.62 52.0 5.26e-01 100.0% 90.7%
3863169 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.62 55.0 4.18e-01 100.0% 95.4%
3654301 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.61 52.0 3.86e-01 100.0% 37.8%
3595729 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.61 52.0 5.13e-01 100.0% 86.3%
3918694 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.61 44.0 4.11e-01 87.8% 62.2%
3615104 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.60 53.0 4.84e-01 100.0% 74.7%
None — 0.60 44.0 3.25e-01 81.1% 31.7%
4316044 101.1.2.388 ↗ alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin 0.60 42.0 3.98e-01 74.3% 71.1%
3943894 77.1.1.7 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.60 53.0 4.49e-01 100.0% 69.6%
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.59 38.0 3.23e-01 77.0% 39.2%
4264655 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.59 52.0 4.22e-01 95.9% 76.3%
4238196 213.1.1.36 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_17 0.59 42.0 3.17e-01 74.3% 53.1%
4231809 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.59 50.0 3.10e-01 100.0% 15.2%
4096825 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.59 47.0 4.18e-01 91.9% 61.7%
4059795 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.59 47.0 4.18e-01 91.9% 82.6%
3397928 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.58 45.0 3.85e-01 85.1% 95.2%
3503503 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.58 45.0 3.67e-01 85.1% 93.8%
3057488 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.58 44.0 3.18e-01 79.7% 32.3%
3534499 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.57 42.0 3.43e-01 78.4% 91.7%
4522129 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.57 45.0 3.95e-01 90.5% 81.7%
4559432 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.57 45.0 3.88e-01 90.5% 60.0%
4610901 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.57 44.0 4.29e-01 100.0% 75.3%
3407503 63.1.1.1 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.56 48.0 3.79e-01 100.0% 78.8%
3224158 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.56 49.0 4.75e-01 100.0% 87.1%
3478161 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.55 42.0 3.52e-01 85.1% 93.3%
4025728 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 43.0 3.78e-01 90.5% 93.0%
3794101 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.53 42.0 3.11e-01 89.2% 84.8%
3266554 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.53 33.0 3.32e-01 78.4% 58.7%
3931734 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 44.0 4.18e-01 100.0% 77.8%
3595017 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.53 45.0 3.50e-01 100.0% 42.8%
4979556 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.53 47.0 3.37e-01 100.0% 90.2%
3636168 2484.1.1.32 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.52 47.0 2.83e-01 100.0% 86.4%
3337523 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 47.0 3.62e-01 100.0% 93.3%
5053501 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.52 47.0 3.12e-01 100.0% 88.6%
5016375 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.52 46.0 3.43e-01 100.0% 95.3%
5017958 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 45.0 3.60e-01 98.6% 63.3%
3510133 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.40e-01 98.6% 82.4%
3635423 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 43.0 3.36e-01 100.0% 56.2%
4005123 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.51 47.0 2.81e-01 100.0% 88.6%
3670118 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.51 41.0 3.08e-01 95.9% 73.8%
4976623 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 46.0 3.47e-01 100.0% 83.4%
3762123 213.1.1.16 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 37.0 3.01e-01 81.1% 64.4%
3954484 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.50 45.0 2.77e-01 100.0% 88.9%
D2 high residues 80-137
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dnaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.74 56.0 3.77e-01 82.8% 65.6%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 58.0 4.31e-01 96.6% 87.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.79e-01 87.9% 85.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.35e-01 98.3% 94.3%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.26e-01 98.3% 93.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.24e-01 96.6% 89.2%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.62 54.0 4.55e-01 96.6% 58.2%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 54.0 4.13e-01 100.0% 45.5%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 50.0 4.34e-01 87.9% 91.8%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 36.0 4.18e-01 81.0% 97.1%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.60 48.0 4.01e-01 89.7% 89.6%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 43.0 3.98e-01 89.7% 60.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.74e-01 96.6% 88.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 4.04e-01 100.0% 49.6%
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 42.0 3.69e-01 86.2% 49.5%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 50.0 3.41e-01 94.8% 54.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 46.0 2.91e-01 89.7% 29.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 3.70e-01 98.3% 46.4%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 38.0 4.39e-01 79.3% 95.2%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.57 45.0 4.57e-01 91.4% 91.2%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.57 43.0 4.26e-01 82.8% 96.8%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.56 43.0 4.41e-01 82.8% 96.5%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.68e-01 96.6% 100.0%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.56 46.0 3.85e-01 98.3% 99.1%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.70e-01 89.7% 86.0%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 44.0 2.89e-01 100.0% 32.6%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.56e-01 89.7% 78.0%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.64e-01 91.4% 79.6%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 40.0 3.55e-01 81.0% 52.2%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.69e-01 91.4% 87.2%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.34e-01 98.3% 77.0%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.72e-01 91.4% 87.3%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.22e-01 81.0% 82.5%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.65e-01 91.4% 84.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 32.0 3.08e-01 70.7% 47.8%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 38.0 2.85e-01 81.0% 83.5%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 34.0 3.19e-01 72.4% 52.8%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.65e-01 93.1% 79.8%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 41.0 3.00e-01 93.1% 53.4%
2vdwG00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 2.74e-01 94.8% 37.0%
1a57A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.00e-01 79.3% 96.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.47e-01 98.3% 62.2%
3653322 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.72 61.0 4.15e-01 96.6% 75.0%
4024868 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.71 54.0 3.52e-01 84.5% 65.7%
4967822 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 47.0 5.48e-01 77.6% 100.0%
3820066 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 6.07e-01 96.6% 98.3%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.69 62.0 4.91e-01 100.0% 95.7%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.69 61.0 6.12e-01 98.3% 100.0%
3278698 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 4.84e-01 96.6% 91.4%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 59.0 5.45e-01 98.3% 100.0%
4962900 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.67 47.0 4.02e-01 86.2% 47.2%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.45e-01 96.6% 100.0%
3598285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.28e-01 98.3% 97.1%
3663352 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 44.0 4.36e-01 82.8% 68.3%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.63 57.0 4.22e-01 100.0% 40.7%
3931217 502.1.1.0 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain 0.63 38.0 3.66e-01 87.9% 53.8%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.05e-01 96.6% 100.0%
4943876 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 54.0 4.57e-01 96.6% 60.0%
4977601 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.61 42.0 3.65e-01 81.0% 45.6%
3170404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.45e-01 98.3% 75.0%
5042912 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.61 44.0 3.98e-01 89.7% 55.0%
3176333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.99e-01 96.6% 90.8%
4977702 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.60 52.0 4.61e-01 96.6% 68.2%
4020029 2003.1.3.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like, NAD_binding_8 0.60 48.0 2.85e-01 93.1% 38.9%
3696482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.43e-01 96.6% 67.4%
4366176 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.60 51.0 4.22e-01 98.3% 99.1%
3704663 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 51.0 4.77e-01 98.3% 100.0%
3257922 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.60 52.0 4.47e-01 100.0% 62.1%
3333753 375.1.1.42 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rep_fac-A_C 0.60 36.0 4.30e-01 74.1% 100.0%
3314730 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.60 40.0 4.03e-01 70.7% 75.0%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 52.0 4.99e-01 100.0% 94.2%
3790969 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.59 39.0 4.35e-01 77.6% 97.5%
4864446 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.59 35.0 4.14e-01 74.1% 100.0%
2756510 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.59 49.0 4.37e-01 100.0% 64.0%
136401 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.58 50.0 4.09e-01 98.3% 53.2%
3972260 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 45.0 3.81e-01 93.1% 99.1%
4961804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.50e-01 98.3% 100.0%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 49.0 4.75e-01 100.0% 96.9%
3739782 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.56 47.0 3.54e-01 98.3% 97.4%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.51e-01 91.4% 96.4%
3576662 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.79e-01 87.9% 32.5%
3598734 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 41.0 2.82e-01 87.9% 32.8%
3878170 5.1.4.549 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 0.53 43.0 2.71e-01 91.4% 28.3%
3362301 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 42.0 2.74e-01 100.0% 24.0%
3232865 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.20e-01 87.9% 43.7%