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MW980061.1__QXV73606.1__X__00072

Bact-Vir

MW980061.1__QXV73606.1__X__00072

Identity

Accession:
MW980061 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Rhizobium_phage_RHph_X2_30

TaxID: 2836126

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-106
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 3.39e-01 92.5% 61.3%
1lu4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 34.0 3.23e-01 86.8% 56.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3990241 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 24.0 3.51e-01 79.2% 74.4%
3717694 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 22.0 3.21e-01 98.1% 80.0%
D2 medium residues 107-158
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.55 39.0 3.23e-01 78.8% 57.4%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 2.86e-01 78.8% 62.3%
1k1yB02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 39.0 2.49e-01 80.8% 86.5%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.51 36.0 2.72e-01 80.8% 31.1%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.39e-01 80.8% 96.3%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 38.0 2.88e-01 86.5% 63.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2391407 12.3.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GalA_N 0.57 39.0 2.69e-01 71.2% 84.0%
5083405 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.53 37.0 2.27e-01 75.0% 24.4%
3941306 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.53 36.0 2.29e-01 75.0% 23.8%
3687908 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.53 37.0 2.99e-01 75.0% 73.6%
3610630 71.1.1.19 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.52 39.0 2.66e-01 90.4% 84.3%
3728883 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.50 38.0 2.86e-01 86.5% 60.8%