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MW980062.1__QXV73673.1__X__00044

Bact-Vir

MW980062.1__QXV73673.1__X__00044

Identity

Accession:
MW980062 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Cuernavacavirus› Rhizobium_phage_RHph_I40

TaxID: 2836138

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-127
PDB
Domain cluster: rep: KM199771.1__AIK68528.1__Lo5R7ANS_58__00058__D55-134
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 48.0 5.21e-01 91.5% 85.5%
5vyoD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 48.0 3.73e-01 92.7% 35.6%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.62 42.0 4.38e-01 70.7% 90.8%
3l9vC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 46.0 3.60e-01 92.7% 37.0%
3gykB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 43.0 3.43e-01 92.7% 36.4%
4pklA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 50.0 4.58e-01 95.1% 94.5%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.58 44.0 4.10e-01 82.9% 89.3%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 43.0 4.25e-01 90.2% 75.0%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 3.59e-01 80.5% 65.3%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 44.0 4.37e-01 100.0% 85.1%
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 45.0 3.10e-01 91.5% 95.5%
2oebA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.53 39.0 3.23e-01 78.0% 63.2%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 4.00e-01 90.2% 77.2%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 43.0 4.06e-01 90.2% 83.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 43.0 4.36e-01 91.5% 93.7%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 41.0 3.56e-01 90.2% 62.3%
3iruA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 39.0 3.99e-01 91.5% 87.2%
1cmzA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 36.0 3.64e-01 80.5% 75.0%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 39.0 3.80e-01 86.6% 100.0%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.51 36.0 3.41e-01 74.4% 89.1%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.51 40.0 4.01e-01 91.5% 83.0%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.51 40.0 3.91e-01 89.0% 82.6%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.58e-01 87.8% 71.4%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 42.0 4.17e-01 97.6% 90.8%
1x2lA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 36.0 3.63e-01 75.6% 82.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2840 101.1.10.16 ↗ alpha arrays › HTH › HTH › Cyclin-like › V-cyclin_C 0.63 44.0 4.09e-01 74.4% 85.8%
3566449 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 45.0 4.15e-01 79.3% 95.2%
3243187 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 42.0 3.88e-01 73.2% 92.4%
3580689 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.59 31.0 3.23e-01 70.7% 53.3%
3976906 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 42.0 3.71e-01 82.9% 93.2%
3282093 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 45.0 4.32e-01 91.5% 81.1%
3434008 3860.1.1.168 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › DUF668 0.55 38.0 3.25e-01 73.2% 75.0%
3289277 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 41.0 2.61e-01 82.9% 15.3%
3544840 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.54 43.0 4.08e-01 100.0% 74.0%
3983005 635.1.1.1 ↗ alpha arrays › YgfB-like › YgfB-like › YgfB-like › UPF0149 0.52 39.0 3.10e-01 79.3% 44.6%
3893243 190.1.1.9 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 0.52 34.0 3.82e-01 93.9% 98.2%
3460412 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.51 37.0 3.05e-01 76.8% 50.6%
3554055 3567.1.1.12 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › CD47 0.50 41.0 3.33e-01 92.7% 79.4%