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MW980063.1__QXV73811.1__X__00124

Bact-Vir

MW980063.1__QXV73811.1__X__00124

Identity

Accession:
MW980063 ↗
Kingdom:
phage

Quality

65.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N46

TaxID: 2836127

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-78
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.76 52.0 5.88e-01 88.4% 96.1%
1pj5A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 39.0 2.96e-01 82.6% 94.9%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.50 37.0 2.98e-01 81.2% 93.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801105 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.58 44.0 3.05e-01 84.1% 29.0%
4966211 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 39.0 3.14e-01 75.4% 98.6%
4477489 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 40.0 3.21e-01 79.7% 92.4%
4055607 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.54 41.0 3.20e-01 82.6% 91.0%
3214604 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 40.0 3.15e-01 81.2% 97.4%
None — 0.53 41.0 2.55e-01 82.6% 53.6%
5036257 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.52 37.0 2.99e-01 75.4% 95.7%
3838220 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 39.0 3.17e-01 82.6% 95.0%
5010225 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.50 38.0 2.47e-01 82.6% 47.8%
D2 medium residues 79-153
PDB
Domain cluster: representative
D3 medium residues 154-210
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h6wA01 2.10.280.10 Mainly Beta › Ribbon › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 1 › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 1 0.63 43.0 4.88e-01 73.7% 100.0%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 42.0 3.94e-01 77.2% 86.1%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.79e-01 96.5% 76.5%
2x41A02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.54 41.0 2.63e-01 82.5% 27.7%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 42.0 3.19e-01 94.7% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2417914 1083.1.1.0 ↗ a+b duplicates or obligate multimers › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units 0.82 67.0 4.89e-01 89.5% 60.7%
4888789 1083.1.1.1 ↗ a+b duplicates or obligate multimers › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › Phage T4 gp12 N-terminal repeating units › gp12-short_mid 0.80 66.0 4.16e-01 91.2% 18.8%
3742225 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 40.0 2.56e-01 77.2% 57.4%