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MW980063.1__QXV73841.1__X__00154

Bact-Vir

MW980063.1__QXV73841.1__X__00154

Identity

Accession:
MW980063 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N46

TaxID: 2836127

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-158
PDB
Domain cluster: rep: KY940711.1__ARQ95339.1__X__00107__D8-116
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.89 81.0 7.58e-01 100.0% 81.3%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.89 81.0 7.98e-01 100.0% 91.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 38.0 4.79e-01 75.2% 90.5%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.75e-01 93.3% 87.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.77e-01 79.0% 90.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 37.0 4.62e-01 75.2% 90.5%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 54.0 5.49e-01 100.0% 95.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 34.0 3.62e-01 87.6% 58.2%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 35.0 3.25e-01 71.4% 44.5%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.62 56.0 5.24e-01 100.0% 81.6%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 42.0 3.05e-01 100.0% 26.2%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 51.0 4.56e-01 100.0% 71.5%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 30.0 3.53e-01 89.5% 75.0%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.57 36.0 3.66e-01 100.0% 63.6%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.56 48.0 4.86e-01 99.0% 95.2%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 46.0 4.53e-01 96.2% 90.3%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 46.0 3.56e-01 100.0% 49.2%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 40.0 3.60e-01 97.1% 57.8%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 40.0 3.77e-01 100.0% 66.2%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.51 37.0 3.52e-01 75.2% 88.0%
1oqwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.51 43.0 3.96e-01 100.0% 69.4%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 3.58e-01 100.0% 56.7%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.50 31.0 3.17e-01 98.1% 62.7%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 46.0 4.32e-01 100.0% 94.4%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.42e-01 100.0% 97.1%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 2.92e-01 100.0% 31.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965272 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.95 82.0 8.28e-01 95.2% 89.5%
5004672 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.93 84.0 8.01e-01 99.0% 82.5%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.92 83.0 8.14e-01 100.0% 89.1%
3966072 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.91 79.0 7.87e-01 99.0% 88.0%
4888824 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.88 71.0 6.68e-01 90.5% 71.2%
2907089 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.84 71.0 6.92e-01 89.5% 83.0%
3938060 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.75 41.0 3.38e-01 86.7% 32.0%
3952888 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.75 47.0 3.99e-01 70.5% 39.4%
5061773 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.73 54.0 5.98e-01 97.1% 100.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 41.0 5.08e-01 75.2% 90.8%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 40.0 4.93e-01 76.2% 89.2%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 40.0 5.01e-01 77.1% 90.8%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 40.0 5.00e-01 79.0% 90.8%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 39.0 4.81e-01 75.2% 87.7%
4985869 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.70 54.0 5.76e-01 100.0% 97.8%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 39.0 4.88e-01 79.0% 90.8%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 39.0 4.86e-01 76.2% 90.8%
5067760 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.67 49.0 5.26e-01 100.0% 91.1%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.65 33.0 3.53e-01 100.0% 55.6%
3950879 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.63 50.0 4.88e-01 91.4% 78.1%
3509161 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.61 43.0 3.17e-01 100.0% 26.7%
4966532 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.61 48.0 4.92e-01 89.5% 86.0%
5021263 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.60 50.0 4.75e-01 100.0% 75.2%
3281675 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 38.0 3.81e-01 86.7% 63.8%
3959285 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 36.0 4.02e-01 85.7% 77.4%
3911019 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 3.41e-01 99.0% 37.9%
4935679 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.59 44.0 4.75e-01 91.4% 93.3%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 38.0 3.89e-01 90.5% 66.7%
4950394 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.58 48.0 4.88e-01 100.0% 90.5%
5002447 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.58 46.0 4.80e-01 99.0% 94.7%
4965521 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.57 48.0 4.80e-01 100.0% 88.2%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 38.0 2.81e-01 78.1% 27.7%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.55 27.0 2.59e-01 99.0% 38.4%
4984691 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 44.0 4.28e-01 100.0% 85.0%
3220105 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 46.0 3.28e-01 100.0% 38.7%
D2 medium residues 1-53
PDB