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MW980063.1__QXV73844.1__X__00157

Bact-Vir

MW980063.1__QXV73844.1__X__00157

Identity

Accession:
MW980063 ↗
Kingdom:
phage

Quality

63.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N46

TaxID: 2836127

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-129
PDB
Domain cluster: rep: term2_saliva_scaffold_1_prodigal-single.1__X__X__00126__D50-128
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.80 51.0 5.86e-01 80.2% 88.1%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 4.22e-01 71.4% 90.9%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.61e-01 78.0% 45.6%
1kwmA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.56 36.0 3.70e-01 72.5% 67.0%
4alzA01 3.30.1340.30 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 0.55 33.0 3.88e-01 92.3% 87.1%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.98e-01 75.8% 93.4%
3dv8A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.75e-01 91.2% 85.6%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.83e-01 93.4% 84.2%
3mdpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 3.65e-01 91.2% 87.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3426433 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 52.0 6.39e-01 70.3% 93.3%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 51.0 6.15e-01 72.5% 91.7%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 53.0 6.21e-01 71.4% 89.2%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 49.0 6.19e-01 71.4% 98.2%
3969916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 57.0 6.42e-01 86.8% 91.4%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.83 62.0 6.96e-01 82.4% 100.0%
2543722 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 55.0 5.92e-01 78.0% 83.5%
3359799 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.79 53.0 4.62e-01 75.8% 47.4%
3656643 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.78 54.0 4.62e-01 76.9% 47.4%
None — 0.78 53.0 4.70e-01 75.8% 50.4%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.78 50.0 4.58e-01 73.6% 50.0%
3802645 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.77 50.0 5.83e-01 73.6% 92.3%
3355076 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.77 49.0 5.90e-01 74.7% 98.3%
3641672 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.77 50.0 5.52e-01 70.3% 81.3%
3299119 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.76 49.0 4.37e-01 73.6% 47.2%
3306283 101.15.1.8 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP 0.76 50.0 5.81e-01 70.3% 93.8%
2124917 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 52.0 4.25e-01 71.4% 48.4%
3375189 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.75 52.0 5.81e-01 80.2% 92.9%
3666767 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.75 49.0 4.65e-01 73.6% 57.1%
3319482 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.74 48.0 4.32e-01 74.7% 48.0%
3819870 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.74 49.0 4.27e-01 74.7% 45.9%
3662672 101.15.1.8 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP 0.73 51.0 5.78e-01 71.4% 92.9%
3365578 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.73 50.0 5.27e-01 70.3% 85.0%
1832368 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.73 66.0 5.08e-01 98.9% 97.9%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.71 53.0 3.64e-01 78.0% 35.5%
3679146 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.71 49.0 4.33e-01 80.2% 51.2%
3417561 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.70 55.0 3.74e-01 82.4% 35.3%
2124918 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.68 54.0 4.67e-01 83.5% 99.3%
3671032 101.15.1.11 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP 0.68 50.0 4.08e-01 76.9% 46.7%
3670445 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.68 56.0 3.79e-01 86.8% 34.8%
3651054 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.68 53.0 4.40e-01 82.4% 51.0%
3647286 101.15.1.7 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.67 48.0 5.20e-01 75.8% 93.3%
2968802 101.15.1.11 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP 0.63 49.0 4.25e-01 82.4% 97.8%
3305689 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.63 49.0 4.23e-01 82.4% 92.1%
3386481 3953.1.1.0 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain 0.58 41.0 4.03e-01 78.0% 67.0%