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MW980063.1__QXV73858.1__X__00171
Bact-VirMW980063.1__QXV73858.1__X__00171
Identity
- Accession:
- MW980063 ↗
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-71
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ip4A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.75 | 62.0 | 6.25e-01 | 97.0% | 90.9% |
| 3lp8A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.73 | 64.0 | 6.26e-01 | 95.5% | 91.4% |
| 1a9xA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.72 | 60.0 | 5.90e-01 | 95.5% | 85.7% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.71 | 59.0 | 5.20e-01 | 92.4% | 70.7% |
| 2pvpA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.69 | 56.0 | 5.72e-01 | 100.0% | 92.2% |
| 1vkzA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.69 | 60.0 | 5.95e-01 | 97.0% | 91.4% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.69 | 56.0 | 4.80e-01 | 90.9% | 56.0% |
| 3wnzA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.68 | 57.0 | 5.17e-01 | 95.5% | 76.1% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.68 | 59.0 | 5.24e-01 | 100.0% | 82.7% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.68 | 55.0 | 4.71e-01 | 92.4% | 56.4% |
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.67 | 57.0 | 4.93e-01 | 97.0% | 90.6% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.65 | 53.0 | 5.23e-01 | 97.0% | 87.5% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.64 | 46.0 | 3.72e-01 | 77.3% | 64.9% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 54.0 | 4.66e-01 | 100.0% | 74.8% |
| 3cgiA00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.63 | 49.0 | 4.17e-01 | 86.4% | 83.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.61 | 42.0 | 3.97e-01 | 72.7% | 78.0% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 49.0 | 4.44e-01 | 92.4% | 93.6% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 51.0 | 4.73e-01 | 100.0% | 74.2% |
| 3k3wB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.59 | 46.0 | 3.44e-01 | 84.8% | 61.0% |
| 4e6zA01 | 3.40.1350.100 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 42.0 | 3.67e-01 | 78.8% | 58.7% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.57 | 41.0 | 3.89e-01 | 78.8% | 96.4% |
| 3t34A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 50.0 | 3.19e-01 | 100.0% | 19.7% |
| 5uazA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 39.0 | 3.58e-01 | 75.8% | 89.4% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 47.0 | 4.47e-01 | 100.0% | 98.8% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.25e-01 | 100.0% | 78.9% |
| 2geeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 4.28e-01 | 100.0% | 76.9% |
| 3a2eA00 | 3.30.430.20 | Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif | 0.54 | 45.0 | 3.89e-01 | 93.9% | 75.0% |
| 8gz3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 42.0 | 3.82e-01 | 90.9% | 92.5% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 43.0 | 4.05e-01 | 98.5% | 100.0% |
| 5flmA02 | 3.30.1360.140 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 40.0 | 3.19e-01 | 83.3% | 88.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5061621 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.75 | 64.0 | 4.09e-01 | 95.5% | 20.6% |
| 3950507 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.73 | 60.0 | 5.79e-01 | 92.4% | 86.7% |
| None | — | 0.72 | 57.0 | 3.29e-01 | 86.4% | 28.0% | |
| 4930538 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.71 | 57.0 | 3.67e-01 | 90.9% | 21.5% |
| 3338688 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.70 | 50.0 | 5.11e-01 | 77.3% | 96.9% |
| 4948543 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.65 | 55.0 | 4.98e-01 | 98.5% | 88.4% |
| 3941935 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 54.0 | 4.63e-01 | 100.0% | 70.4% |
| 4990094 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.64 | 45.0 | 4.46e-01 | 74.2% | 98.6% |
| 4023494 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 53.0 | 4.50e-01 | 100.0% | 91.7% |
| 4483024 | 206.1.3.17 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 | 0.63 | 48.0 | 3.25e-01 | 83.3% | 21.7% |
| 4085698 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 50.0 | 4.30e-01 | 100.0% | 66.4% |
| 3290896 | 4244.1.1.6 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › DUF5682 | 0.58 | 47.0 | 3.30e-01 | 89.4% | 63.7% |
| 4023481 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 46.0 | 3.56e-01 | 90.9% | 86.3% |
| 3267813 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.56 | 48.0 | 4.41e-01 | 95.5% | 95.3% |
| 4478659 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.56 | 44.0 | 2.89e-01 | 86.4% | 32.2% |
| 3719247 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.55 | 45.0 | 2.92e-01 | 100.0% | 17.8% |
| 3403046 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 44.0 | 4.06e-01 | 98.5% | 80.0% |