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MW980063.1__QXV73956.1__X__00269

Bact-Vir

MW980063.1__QXV73956.1__X__00269

Identity

Accession:
MW980063 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-74
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 60.0 4.62e-01 92.5% 56.0%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.71 49.0 4.83e-01 73.1% 76.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.70 54.0 4.64e-01 82.1% 55.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 52.0 4.92e-01 80.6% 71.4%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.65 51.0 4.57e-01 85.1% 78.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.87e-01 89.6% 93.3%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.65 56.0 3.96e-01 100.0% 31.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 3.91e-01 80.6% 73.9%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.95e-01 94.0% 89.4%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.62 45.0 4.35e-01 79.1% 92.1%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.62 45.0 3.79e-01 79.1% 46.2%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.63e-01 88.1% 89.0%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.40e-01 77.6% 79.4%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.67e-01 94.0% 85.6%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 43.0 4.07e-01 77.6% 79.0%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.72e-01 88.1% 73.7%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.55e-01 95.5% 87.6%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 42.0 4.07e-01 77.6% 86.8%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.51e-01 94.0% 85.2%
2ruhA00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.58 36.0 2.95e-01 83.6% 32.1%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.36e-01 79.1% 73.6%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.56e-01 85.1% 58.6%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.70e-01 77.6% 95.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 2.95e-01 74.6% 31.8%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.58e-01 88.1% 67.7%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.54 42.0 3.11e-01 85.1% 99.4%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.98e-01 89.6% 82.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.53e-01 89.6% 63.6%
5c4iB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.75e-01 74.6% 80.3%
3s6pG00 6.10.140.1660 Special › Helix non-globular › Helix Hairpins › 0.50 32.0 3.14e-01 89.6% 58.3%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4646162 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.80 56.0 5.77e-01 73.1% 80.0%
3732593 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.79 60.0 6.09e-01 80.6% 90.8%
4960707 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.74 52.0 5.26e-01 73.1% 84.6%
5010613 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.73 53.0 5.39e-01 76.1% 78.5%
3511772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 40.0 3.71e-01 80.6% 43.5%
5047912 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 51.0 5.19e-01 73.1% 86.2%
4973562 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 50.0 5.08e-01 71.6% 87.7%
5018894 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 50.0 5.14e-01 73.1% 86.2%
5040248 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 50.0 4.90e-01 73.1% 81.3%
5037944 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.72 50.0 5.11e-01 73.1% 86.2%
5037711 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.72 50.0 5.11e-01 73.1% 81.5%
4990536 101.1.9.134 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.72 54.0 5.50e-01 80.6% 98.5%
3253771 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.71 56.0 3.85e-01 94.0% 24.8%
4214015 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.71 54.0 4.52e-01 91.0% 49.1%
4948608 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.71 49.0 5.00e-01 73.1% 86.2%
4220398 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.70 58.0 4.33e-01 92.5% 66.5%
5066457 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.69 47.0 4.84e-01 71.6% 84.6%
4585740 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.69 53.0 4.77e-01 91.0% 61.1%
3690781 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.68 58.0 5.23e-01 98.5% 95.8%
5007175 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.68 47.0 4.92e-01 73.1% 83.3%
3938199 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 51.0 3.75e-01 89.6% 31.4%
4261006 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.67 57.0 4.47e-01 98.5% 72.9%
3573573 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.66 51.0 3.56e-01 95.5% 24.8%
3973486 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 55.0 5.03e-01 94.0% 85.6%
4971513 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 49.0 4.91e-01 85.1% 98.6%
3574242 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.65 60.0 3.35e-01 100.0% 13.5%
3593016 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 50.0 2.72e-01 86.6% 4.4%
3761667 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 44.0 4.16e-01 80.6% 60.0%
4988554 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 46.0 4.65e-01 77.6% 84.6%
5066439 304.3.1.14 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C 0.64 45.0 4.64e-01 77.6% 81.5%
3629005 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.64 58.0 3.91e-01 100.0% 28.9%
3944920 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 53.0 4.84e-01 95.5% 84.4%
3942606 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 52.0 4.79e-01 91.0% 88.2%
4010187 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 52.0 4.75e-01 94.0% 85.6%
3970777 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.79e-01 95.5% 83.3%
3488179 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.61 54.0 4.89e-01 97.0% 98.9%
3973740 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 44.0 3.89e-01 77.6% 74.0%
3969371 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.70e-01 95.5% 85.6%
3967891 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 49.0 4.52e-01 88.1% 85.9%
4946919 4271.1.1.0 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.60 52.0 3.68e-01 97.0% 46.7%
3282607 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 3.54e-01 76.1% 77.6%
3968396 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 49.0 4.46e-01 91.0% 83.3%
3942932 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 49.0 4.27e-01 89.6% 74.0%
None 0.60 46.0 3.25e-01 86.6% 73.6%
4031672 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 43.0 4.12e-01 77.6% 92.5%
4008585 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 48.0 4.41e-01 89.6% 83.3%
4032354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 50.0 4.60e-01 95.5% 84.4%
3734050 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.59 50.0 3.28e-01 98.5% 56.6%
3970001 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.63e-01 95.5% 82.2%
4009354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 48.0 4.34e-01 89.6% 81.1%
3966780 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.57e-01 95.5% 84.4%
3991740 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 40.0 2.55e-01 70.1% 15.8%
3968471 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.58 49.0 4.46e-01 94.0% 84.4%
3970719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.11e-01 80.6% 85.0%
5010704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.56e-01 86.6% 85.0%
3279636 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 49.0 4.51e-01 97.0% 83.3%
3982869 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 49.0 4.55e-01 95.5% 85.9%
3811947 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.57 38.0 3.39e-01 70.1% 45.7%
3946198 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 41.0 3.86e-01 77.6% 87.1%
3387117 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 43.0 4.13e-01 83.6% 85.0%
5062774 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.21e-01 80.6% 40.0%
3969385 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.09e-01 83.6% 86.3%
3946422 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.56 43.0 4.00e-01 83.6% 82.4%
3284225 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 43.0 4.06e-01 83.6% 85.0%
3226769 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 42.0 4.19e-01 89.6% 98.6%
3989440 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 44.0 4.06e-01 91.0% 84.4%
4973149 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 42.0 2.60e-01 80.6% 27.3%
3981080 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 42.0 3.91e-01 85.1% 84.7%
3412323 377.1.1.18 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD 0.54 44.0 4.24e-01 92.5% 78.7%
3945660 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 39.0 3.66e-01 77.6% 77.6%
4995545 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 39.0 3.55e-01 77.6% 90.3%
4371313 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 43.0 3.87e-01 91.0% 76.8%
5020992 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.53 43.0 3.67e-01 91.0% 76.4%
5031879 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.78e-01 88.1% 84.2%
4979152 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.52 37.0 3.32e-01 74.6% 77.9%
5052967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 2.85e-01 80.6% 30.3%
5001240 2007.1.2.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp 0.51 38.0 2.67e-01 85.1% 27.7%
4028643 101.1.11.187 alpha arrays › HTH › HTH › Ribbon-helix-helix › NOL10_2nd 0.51 37.0 3.61e-01 83.6% 70.7%
5073893 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 38.0 3.56e-01 82.1% 90.6%