Back to structures

MW980064.1__QXV74086.1__X__00115

Bact-Vir

MW980064.1__QXV74086.1__X__00115

Identity

Accession:
MW980064 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-86
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16225.11 best DUF4884 33.3 4.70e-08 96.8% 65.0%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.75 52.0 4.63e-01 75.8% 51.1%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.71 56.0 3.68e-01 85.5% 93.8%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.71 63.0 4.26e-01 100.0% 79.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 62.0 4.75e-01 100.0% 44.8%
3m07A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 48.0 4.66e-01 74.2% 98.6%
3i1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 49.0 4.16e-01 75.8% 94.2%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.68 46.0 3.87e-01 71.0% 43.9%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.68 58.0 4.73e-01 98.4% 67.2%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.67 49.0 4.71e-01 77.4% 93.0%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 51.0 4.56e-01 82.3% 98.9%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.25e-01 100.0% 37.0%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.67 48.0 3.72e-01 75.8% 73.5%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.67 56.0 3.63e-01 93.5% 41.4%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 57.0 4.45e-01 100.0% 46.2%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 59.0 4.33e-01 100.0% 42.9%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.65 48.0 4.25e-01 80.6% 57.9%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.65 56.0 4.07e-01 100.0% 40.8%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.65 50.0 4.15e-01 87.1% 98.3%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 46.0 4.50e-01 75.8% 98.5%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.64 55.0 3.95e-01 100.0% 37.7%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 51.0 4.29e-01 87.1% 93.1%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 53.0 4.18e-01 100.0% 44.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.63 50.0 3.60e-01 87.1% 33.7%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.62 41.0 3.01e-01 74.2% 24.9%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.62 42.0 3.88e-01 71.0% 54.9%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 3.75e-01 100.0% 76.3%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 48.0 3.19e-01 93.5% 68.3%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 52.0 3.54e-01 96.8% 36.1%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.60 53.0 4.12e-01 100.0% 73.7%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 49.0 4.56e-01 91.9% 78.8%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.60 41.0 3.13e-01 71.0% 31.9%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.50e-01 96.8% 69.0%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 53.0 4.64e-01 100.0% 71.0%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.59 51.0 3.64e-01 100.0% 66.3%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 49.0 4.21e-01 93.5% 80.8%
3hkzG00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 46.0 3.81e-01 88.7% 90.3%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 47.0 2.95e-01 91.9% 73.7%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 52.0 4.28e-01 100.0% 65.5%
2nvwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 49.0 3.48e-01 100.0% 74.3%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 51.0 4.45e-01 100.0% 74.5%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 51.0 4.18e-01 100.0% 63.1%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.57 47.0 3.08e-01 95.2% 50.2%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 44.0 3.77e-01 87.1% 55.2%
3rnsA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 3.91e-01 90.3% 64.0%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.87e-01 98.4% 82.0%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 46.0 3.73e-01 96.8% 68.5%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.73e-01 93.5% 83.0%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.02e-01 100.0% 73.8%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 42.0 3.86e-01 100.0% 76.0%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 46.0 3.15e-01 100.0% 40.2%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.52 45.0 3.71e-01 100.0% 67.5%
6cz4A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.68e-01 87.1% 74.4%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 47.0 3.87e-01 100.0% 75.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.82 70.0 4.69e-01 93.5% 34.2%
3551142 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 52.0 3.97e-01 74.2% 84.1%
4013292 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 52.0 4.02e-01 74.2% 91.9%
4012616 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.73 57.0 4.69e-01 87.1% 46.1%
3944596 9.1.1.27 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_C 0.73 64.0 5.25e-01 100.0% 90.4%
3216358 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.72 50.0 3.12e-01 72.6% 27.5%
3238369 12.1.1.88 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 0.71 54.0 5.78e-01 90.3% 96.2%
3721965 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.71 55.0 4.52e-01 88.7% 46.1%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.71 50.0 3.86e-01 74.2% 88.9%
3001014 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.70 54.0 4.10e-01 87.1% 35.8%
3418904 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.69 54.0 4.72e-01 88.7% 59.0%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.69 49.0 3.81e-01 74.2% 93.1%
3188851 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.69 52.0 4.33e-01 82.3% 65.5%
3987339 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.68 61.0 4.50e-01 100.0% 39.4%
3318685 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.68 51.0 4.35e-01 82.3% 59.0%
3230925 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.68 48.0 3.79e-01 74.2% 92.3%
5024359 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.68 48.0 4.40e-01 74.2% 98.8%
3685284 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.68 52.0 3.25e-01 82.3% 71.0%
3812869 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.67 53.0 4.61e-01 88.7% 58.0%
3427945 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.67 52.0 4.55e-01 88.7% 61.0%
3375268 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.67 60.0 4.06e-01 100.0% 30.5%
6329 331.3.1.10 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.67 57.0 4.44e-01 100.0% 45.9%
3960667 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 60.0 4.61e-01 100.0% 63.0%
3972685 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 57.0 4.39e-01 100.0% 44.7%
3408795 12.1.1.60 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.65 51.0 5.17e-01 85.5% 95.1%
1105421 12.1.1.14 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C 0.65 50.0 4.29e-01 82.3% 97.9%
3402405 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.65 51.0 5.11e-01 85.5% 92.1%
3630631 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.64 54.0 3.11e-01 100.0% 70.7%
3414586 11.1.1.824 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chitin_bind_4 0.64 50.0 4.41e-01 85.5% 62.4%
3572103 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.64 54.0 4.34e-01 100.0% 45.9%
3938627 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.64 49.0 4.67e-01 85.5% 73.3%
3668463 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 55.0 3.64e-01 95.2% 80.4%
4324615 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.64 57.0 4.22e-01 100.0% 40.0%
3770448 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 56.0 4.09e-01 100.0% 55.9%
3466801 12.1.1.36 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GHD 0.63 50.0 4.89e-01 88.7% 94.3%
119302 3146.1.1.0 a+b complex topology › gH main domain › gH main domain › gH main domain 0.63 50.0 3.14e-01 87.1% 18.1%
3475222 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 51.0 3.05e-01 91.9% 57.5%
3420734 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.62 52.0 3.64e-01 100.0% 45.1%
3958592 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.61 50.0 3.17e-01 91.9% 67.6%
3455310 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 52.0 3.30e-01 95.2% 41.9%
3934097 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 53.0 4.10e-01 100.0% 67.9%
3223544 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.60 50.0 4.22e-01 100.0% 71.3%
3342760 2007.1.1.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.60 46.0 3.49e-01 85.5% 85.2%
3264011 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.60 49.0 3.71e-01 91.9% 71.9%
3936914 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.60 53.0 4.16e-01 100.0% 66.9%
3399293 79.1.1.23 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 0.59 51.0 4.37e-01 100.0% 65.0%
3968900 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 50.0 4.11e-01 100.0% 52.5%
2177 5.1.3.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Phytase 0.58 47.0 2.95e-01 91.9% 73.7%
3914722 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.84e-01 74.2% 80.0%
3197023 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.57 47.0 2.89e-01 91.9% 44.4%
3960834 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 42.0 3.39e-01 79.0% 62.5%
3962841 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 49.0 3.50e-01 98.4% 45.6%
3239992 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 49.0 3.57e-01 100.0% 64.9%
3954845 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.56 48.0 3.03e-01 95.2% 25.1%
4956914 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 46.0 3.18e-01 100.0% 32.7%
3230405 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.71e-01 93.5% 33.3%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 47.0 3.75e-01 100.0% 66.2%
4082072 12.1.1.22 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.53 44.0 3.99e-01 100.0% 68.4%
3709449 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.84e-01 98.4% 40.0%