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MW980064.1__QXV74104.1__X__00133

Bact-Vir

MW980064.1__QXV74104.1__X__00133

Identity

Accession:
MW980064 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHEph12

TaxID: 2836128

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-74
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.69 57.0 4.46e-01 88.7% 74.7%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 52.0 4.72e-01 93.0% 60.6%
1yllC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 50.0 4.37e-01 88.7% 55.0%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 50.0 4.74e-01 100.0% 69.3%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.62 48.0 5.09e-01 85.9% 98.3%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 52.0 4.04e-01 98.6% 57.2%
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.60 47.0 3.87e-01 87.3% 57.2%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.60 43.0 3.83e-01 76.1% 94.2%
2qcuA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.60 41.0 3.18e-01 71.8% 44.1%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.91e-01 87.3% 53.8%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 49.0 4.13e-01 94.4% 62.7%
4qszA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 47.0 3.12e-01 88.7% 38.5%
7vt4A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.58 48.0 4.15e-01 98.6% 96.1%
1pmiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.60e-01 98.6% 43.2%
2lsmA00 3.40.5.70 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain 0.56 41.0 4.39e-01 83.1% 91.8%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.63e-01 98.6% 41.6%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 4.14e-01 94.4% 91.3%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.29e-01 90.1% 62.4%
4uzgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.65e-01 87.3% 86.8%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.37e-01 88.7% 58.0%
3ooxA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.54 46.0 3.10e-01 98.6% 38.0%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.54 43.0 3.15e-01 91.5% 71.8%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.53 38.0 3.04e-01 77.5% 81.8%
7fh5A01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 44.0 3.10e-01 98.6% 37.5%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 44.0 3.06e-01 98.6% 36.3%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.30e-01 88.7% 44.1%
4asmB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.68e-01 90.1% 92.2%
4w79A00 3.10.620.10 Alpha Beta › Roll › C8orf32 fold › Protein N-terminal glutamine amidohydrolase, alpha beta roll 0.52 42.0 3.19e-01 97.2% 94.1%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.85e-01 85.9% 87.3%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 37.0 3.23e-01 83.1% 100.0%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 36.0 3.42e-01 81.7% 92.7%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010516 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.68 54.0 4.30e-01 87.3% 44.8%
3265780 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.65 47.0 5.05e-01 88.7% 91.7%
4006496 10.12.1.116 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30441 0.64 52.0 4.22e-01 88.7% 73.3%
3275342 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.63 51.0 4.37e-01 88.7% 68.7%
3600426 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.62 45.0 4.92e-01 85.9% 100.0%
3276383 898.1.1.0 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 0.62 49.0 4.14e-01 93.0% 92.6%
4945546 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.61 51.0 4.54e-01 95.8% 88.6%
3637320 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 49.0 3.82e-01 90.1% 51.2%
3782780 11.1.1.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rho_GDI 0.60 49.0 3.95e-01 91.5% 81.8%
1565132 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.60 48.0 3.17e-01 88.7% 36.9%
5059717 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 47.0 4.39e-01 90.1% 91.6%
5041290 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 41.0 2.62e-01 73.2% 18.7%
3253285 304.8.1.76 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF28943 0.59 44.0 3.75e-01 81.7% 96.7%
3732427 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 51.0 3.88e-01 100.0% 60.3%
3720434 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 51.0 3.81e-01 100.0% 57.8%
4995865 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 45.0 3.84e-01 88.7% 49.6%
3895865 3715.1.1.3 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › PF30893 0.58 43.0 4.29e-01 83.1% 86.7%
4016056 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 48.0 3.71e-01 94.4% 51.5%
3654582 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 49.0 3.42e-01 98.6% 42.4%
3380147 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.57 50.0 3.50e-01 100.0% 87.9%
3236043 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.57 47.0 4.09e-01 94.4% 89.6%
4236729 10.12.1.33 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth 0.57 48.0 4.02e-01 98.6% 54.8%
3653970 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.57 49.0 3.48e-01 98.6% 46.1%
3400156 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 47.0 4.22e-01 94.4% 66.0%
381831 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 46.0 4.21e-01 90.1% 67.0%
3648822 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.09e-01 90.1% 91.0%
3550019 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 47.0 2.68e-01 100.0% 24.4%
3725555 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.56 49.0 3.64e-01 100.0% 50.5%
3698346 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.56 48.0 3.60e-01 100.0% 50.5%
5023638 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.55 46.0 3.71e-01 97.2% 98.7%
5037411 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.55 40.0 3.69e-01 80.3% 87.0%
4108632 10.1.1.74 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.55 42.0 2.78e-01 88.7% 91.4%
3310123 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.54 46.0 3.54e-01 98.6% 65.1%
3808421 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.54 46.0 3.71e-01 98.6% 69.0%
1554318 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.54 41.0 3.53e-01 84.5% 90.0%
3730695 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.53 45.0 3.41e-01 98.6% 64.2%
5074269 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.53 42.0 3.34e-01 88.7% 99.3%
1313595 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.52 38.0 3.53e-01 80.3% 90.6%
3341776 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.52 36.0 2.96e-01 74.6% 42.7%