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MW980064.1__QXV74123.1__X__00152

Bact-Vir

MW980064.1__QXV74123.1__X__00152

Identity

Accession:
MW980064 ↗
Kingdom:
phage

Quality

59.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHEph12

TaxID: 2836128

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61_88-121
PDB
Domain cluster: rep: MG592415.1__AUR83138.1__NVP1031O_156__00156__D29-90_114-136
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 33.0 2.93e-01 88.4% 35.7%
5fjqA00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.53 46.0 3.70e-01 93.7% 86.1%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.95e-01 82.1% 100.0%
6lsaC01 2.70.230.10 Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › 0.52 44.0 3.50e-01 97.9% 69.7%
8os3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.05e-01 84.2% 97.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928608 3899.1.1.0 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.79 71.0 5.81e-01 94.7% 68.6%
5027663 244.2.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.70 36.0 4.34e-01 84.2% 73.8%
4336615 1093.1.1.0 ↗ a+b two layers › DUF4479 › DUF4479 › DUF4479 0.67 36.0 3.66e-01 87.4% 52.6%
3484942 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 43.0 4.21e-01 77.9% 98.1%
4014832 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.56 44.0 3.52e-01 83.2% 80.0%
168661 4258.1.1.1 ↗ mixed a+b and a/b › Ns1 effector domain-like › Ns1 effector domain-like › Ns1 effector domain-like › Flu_NS1 0.56 35.0 3.15e-01 87.4% 46.5%
3974308 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 36.0 4.09e-01 80.0% 91.4%
3596920 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 43.0 4.13e-01 85.3% 99.1%
5010049 11.1.1.1410 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.54 37.0 3.81e-01 70.5% 100.0%
3855572 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 39.0 3.52e-01 76.8% 81.5%
3216877 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.54 28.0 3.01e-01 88.4% 57.6%
3226414 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.53 41.0 2.63e-01 83.2% 24.7%
3888005 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 38.0 3.62e-01 75.8% 97.3%
3514167 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.59e-01 84.2% 75.6%
D2 medium residues 62-87_122-218
PDB