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MW980068.1__QXV74451.1__X__00041

Bact-Vir

MW980068.1__QXV74451.1__X__00041

Identity

Accession:
MW980068 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHEph18

TaxID: 2836133

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-128
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 5.54e-01 98.7% 86.8%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 5.41e-01 97.5% 98.3%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 44.0 5.10e-01 97.5% 98.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.98e-01 97.5% 90.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.01e-01 98.7% 50.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.54e-01 100.0% 75.3%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 4.94e-01 96.2% 89.6%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.90e-01 84.8% 82.6%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.54 40.0 3.84e-01 82.3% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 4.48e-01 100.0% 97.1%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 48.0 4.22e-01 100.0% 80.3%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 46.0 3.37e-01 100.0% 87.9%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.53 43.0 3.30e-01 92.4% 70.5%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.28e-01 92.4% 97.6%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.55e-01 89.9% 90.8%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.59e-01 96.2% 91.9%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.52 46.0 3.25e-01 100.0% 90.9%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.52 42.0 2.97e-01 89.9% 31.3%
3lsoA01 2.60.40.2270 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.33e-01 93.7% 95.2%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.50 36.0 2.62e-01 77.2% 43.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.79 61.0 6.48e-01 96.2% 91.4%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.78 59.0 5.54e-01 93.7% 66.3%
3406338 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 55.0 4.76e-01 98.7% 63.5%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.90e-01 100.0% 96.7%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 56.0 4.96e-01 100.0% 80.0%
3633294 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.60 51.0 4.30e-01 100.0% 55.1%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 55.0 4.88e-01 100.0% 81.8%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 55.0 5.39e-01 98.7% 91.8%
5035282 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 53.0 4.57e-01 100.0% 64.8%
5064712 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 44.0 3.41e-01 96.2% 35.4%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 51.0 4.53e-01 100.0% 65.0%
3424637 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.57 50.0 4.73e-01 98.7% 84.2%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 47.0 4.19e-01 100.0% 68.3%
3303119 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.54 44.0 3.75e-01 89.9% 77.6%
3836393 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.54 46.0 3.59e-01 100.0% 90.9%
4974839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.72e-01 92.4% 99.3%
4998648 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.54 36.0 3.49e-01 83.5% 57.9%
3787702 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.54 45.0 3.64e-01 92.4% 98.7%
1548777 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.54 46.0 3.37e-01 100.0% 87.9%
3466796 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 41.0 3.22e-01 83.5% 56.6%
3365246 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 40.0 3.20e-01 83.5% 58.2%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.53 44.0 4.43e-01 93.7% 100.0%
3888419 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.53 46.0 3.22e-01 100.0% 87.3%
2373 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 46.0 3.23e-01 100.0% 89.2%
None — 0.52 38.0 2.88e-01 79.7% 73.7%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.68e-01 96.2% 60.5%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 41.0 3.68e-01 100.0% 61.8%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 47.0 3.84e-01 100.0% 65.0%
3930210 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 41.0 2.94e-01 88.6% 40.4%
3786336 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 37.0 2.93e-01 87.3% 37.0%
4453447 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.50 40.0 3.50e-01 86.1% 82.5%
3691111 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 40.0 3.13e-01 87.3% 68.8%