Back to structures

MW980069.1__QXV74532.1__X__00039

Bact-Vir

MW980069.1__QXV74532.1__X__00039

Identity

Accession:
MW980069 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-82
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22262.3 best DUF6950 81.6 8.10e-23 98.8% 59.7%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d5vA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 35.0 3.62e-01 70.7% 91.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027714 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.58 38.0 3.43e-01 96.3% 49.1%
3477205 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.58 38.0 3.50e-01 95.1% 52.4%
3537773 193.1.1.21 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF5745 0.57 39.0 3.50e-01 92.7% 49.2%
3532105 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.52 35.0 3.12e-01 95.1% 47.2%
3642632 1008.1.1.4 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Mt_ATP_synt 0.50 43.0 3.84e-01 97.6% 80.0%
D2 medium residues 83-138
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22262.3 best DUF6950 33.2 7.10e-08 100.0% 39.6%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.78 69.0 5.26e-01 100.0% 49.6%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 66.0 4.81e-01 100.0% 49.3%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 62.0 4.73e-01 100.0% 74.5%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 60.0 4.61e-01 100.0% 43.0%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 46.0 4.24e-01 71.4% 54.2%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.36e-01 100.0% 100.0%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 45.0 4.55e-01 73.2% 94.5%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.64e-01 96.4% 92.7%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.62 47.0 3.87e-01 85.7% 94.5%
2f8xC02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 50.0 3.72e-01 94.6% 98.1%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.60 50.0 4.14e-01 100.0% 60.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 47.0 4.68e-01 91.1% 100.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.24e-01 100.0% 73.5%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.20e-01 91.1% 83.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.56e-01 87.5% 90.0%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.05e-01 82.1% 77.6%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.59 48.0 4.15e-01 100.0% 94.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.20e-01 82.1% 96.8%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 3.80e-01 78.6% 72.5%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.27e-01 92.9% 91.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 46.0 3.28e-01 96.4% 51.2%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 48.0 4.13e-01 100.0% 81.4%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 47.0 3.81e-01 100.0% 48.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.11e-01 85.7% 87.9%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 43.0 3.65e-01 87.5% 95.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 45.0 2.99e-01 100.0% 34.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.19e-01 83.9% 95.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.06e-01 82.1% 100.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.62e-01 100.0% 70.8%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.32e-01 82.1% 94.0%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 38.0 3.02e-01 71.4% 94.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 3.75e-01 76.8% 83.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.28e-01 94.6% 95.5%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.55 46.0 3.23e-01 100.0% 84.8%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.54 44.0 3.40e-01 94.6% 67.4%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.55e-01 85.7% 73.2%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.53 43.0 3.23e-01 100.0% 92.4%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 42.0 3.12e-01 92.9% 36.8%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.52 42.0 3.68e-01 100.0% 64.3%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.36e-01 100.0% 95.3%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.26e-01 83.9% 93.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.50 37.0 2.92e-01 82.1% 88.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4277582 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.76 67.0 5.07e-01 100.0% 47.4%
26896 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.73 63.0 5.53e-01 100.0% 83.7%
3789912 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.69 60.0 5.29e-01 100.0% 82.4%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.69 54.0 5.35e-01 92.9% 81.7%
3236058 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.68 59.0 5.20e-01 100.0% 83.5%
3590784 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.68 57.0 5.49e-01 94.6% 81.5%
4031578 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.76e-01 94.6% 98.0%
5067286 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 54.0 4.75e-01 100.0% 94.4%
3297192 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.63 51.0 4.24e-01 92.9% 96.2%
4656461 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 52.0 5.17e-01 96.4% 100.0%
4451993 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 5.04e-01 96.4% 100.0%
4139778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 52.0 4.82e-01 100.0% 95.9%
3458699 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.61 49.0 3.50e-01 87.5% 41.1%
4084850 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 50.0 4.89e-01 100.0% 100.0%
4124780 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 4.73e-01 100.0% 94.5%
3619334 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 4.11e-01 87.5% 91.1%
5054738 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.67e-01 83.9% 85.5%
3036710 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.66e-01 89.3% 95.2%
4264671 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 4.58e-01 100.0% 83.7%
4478186 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.68e-01 78.6% 100.0%
4185009 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 49.0 4.73e-01 96.4% 98.5%
3821919 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.59 47.0 4.66e-01 89.3% 85.0%
4163851 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 50.0 4.96e-01 100.0% 100.0%
3755099 604.1.1.97 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.59 44.0 3.90e-01 82.1% 68.2%
5074749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.60e-01 96.4% 85.7%
3485667 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.59 46.0 4.25e-01 89.3% 100.0%
4342488 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.58e-01 96.4% 93.7%
5005252 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.40e-01 75.0% 93.3%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.59 46.0 4.63e-01 89.3% 100.0%
4953054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.32e-01 91.1% 80.0%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 47.0 4.56e-01 100.0% 97.1%
4332042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.28e-01 89.3% 82.9%
4098870 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.58 47.0 4.08e-01 96.4% 67.4%
4269844 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 46.0 4.45e-01 98.2% 94.3%
4941512 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.23e-01 89.3% 82.9%
4405359 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 46.0 4.36e-01 100.0% 100.0%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 46.0 4.50e-01 96.4% 98.5%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.53e-01 94.6% 98.5%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 46.0 4.44e-01 100.0% 95.7%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.57 45.0 4.43e-01 92.9% 100.0%
4499953 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 45.0 4.45e-01 94.6% 100.0%
4658938 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.57 45.0 3.95e-01 91.1% 67.8%
4149821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.40e-01 92.9% 96.7%
4123180 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.57 45.0 4.17e-01 91.1% 82.7%
5063433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.15e-01 75.0% 84.0%
4104114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 43.0 4.13e-01 83.9% 89.2%
4151014 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 45.0 4.48e-01 96.4% 100.0%
3961809 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.57 44.0 3.96e-01 87.5% 83.7%
5034126 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.57 42.0 4.19e-01 82.1% 76.7%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.23e-01 91.1% 92.9%
5078006 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.56 43.0 4.03e-01 83.9% 67.1%
4533388 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.56 45.0 3.16e-01 100.0% 34.7%
4970821 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.56 42.0 3.95e-01 85.7% 65.7%
4932434 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.56 44.0 4.09e-01 85.7% 70.0%
3606753 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 47.0 2.92e-01 100.0% 54.3%
4212091 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 43.0 4.20e-01 92.9% 95.4%
3191658 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.56 41.0 2.92e-01 83.9% 68.3%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 45.0 4.32e-01 98.2% 92.9%
4975764 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.56 45.0 4.23e-01 92.9% 82.9%
4930436 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.56 43.0 3.51e-01 87.5% 77.4%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 44.0 4.25e-01 94.6% 96.9%
3178051 6.1.1.40 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › PF29113 0.55 40.0 3.26e-01 82.1% 99.2%
3738575 2003.1.5.71 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.55 41.0 2.68e-01 87.5% 77.8%
4963432 4076.2.1.7 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF5817 0.55 39.0 3.56e-01 85.7% 52.9%
3833943 220.1.1.128 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPT16 0.55 41.0 3.03e-01 85.7% 69.7%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.28e-01 85.7% 96.4%
3887129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.46e-01 80.4% 84.4%
5005903 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.54 43.0 3.70e-01 94.6% 71.0%
4069793 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 44.0 4.19e-01 98.2% 91.4%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.19e-01 98.2% 91.4%
3930756 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.53 42.0 2.56e-01 87.5% 25.6%
3782293 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.53 43.0 4.40e-01 98.2% 96.4%
3227356 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.53 39.0 2.81e-01 87.5% 74.0%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.88e-01 91.1% 86.2%
4020676 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 38.0 2.78e-01 83.9% 71.3%
3371935 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.50 43.0 3.04e-01 100.0% 30.5%
4530314 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.50 36.0 3.57e-01 76.8% 79.3%