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MW980069.1QXV74539.1X__00046

Bact-Vir

MW980069.1__QXV74539.1__X__00046

Identity

Accession:: MW980069 ↗
Kingdom:: phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHEph19

TaxID: 2836125

Cluster

View cluster (80 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-37_127-145

PDB

Domain cluster: representative

CATH (36)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qo8A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.82	67.0	5.12e-01	88.0%	60.4%
3fd9A03	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.80	61.0	5.27e-01	80.0%	69.9%
1wp7A00	1.10.287.770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like	0.80	65.0	5.96e-01	88.0%	78.1%
1wtyA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.80	59.0	4.40e-01	78.0%	78.4%
3juiA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.79	63.0	4.27e-01	88.0%	27.6%
2ddhA04	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.77	70.0	5.06e-01	100.0%	80.3%
2e9xA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.77	63.0	4.56e-01	88.0%	37.5%
5svlA01	1.10.287.940	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel	0.77	66.0	6.02e-01	98.0%	97.1%
2js5A00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.75	60.0	5.28e-01	86.0%	81.7%
3fppA03	6.10.140.1990	Special › Helix non-globular › Helix Hairpins ›	0.74	59.0	4.91e-01	88.0%	55.7%
4v1gA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.74	65.0	5.43e-01	98.0%	92.9%
1wa8A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.74	60.0	4.73e-01	88.0%	62.6%
6qumQ00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.73	59.0	5.17e-01	88.0%	93.2%
1x9fD00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.72	55.0	4.02e-01	84.0%	30.0%
6bz0D01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.71	60.0	3.95e-01	100.0%	41.2%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.69	57.0	4.27e-01	90.0%	99.2%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.69	61.0	4.67e-01	98.0%	51.8%
1sg7A00	1.10.1740.70	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB	0.67	54.0	4.86e-01	94.0%	80.0%
2vkjA00	1.20.58.2030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	47.0	3.66e-01	96.0%	34.9%
3v5uA01	6.10.280.80	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region	0.67	53.0	4.63e-01	88.0%	80.3%
3vm9A02	6.10.140.2110	Special › Helix non-globular › Helix Hairpins ›	0.67	55.0	5.36e-01	94.0%	86.0%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.66	61.0	4.63e-01	98.0%	73.6%
2vwaA00	1.20.58.1330	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein	0.64	53.0	4.30e-01	94.0%	54.5%
2mtqA00	1.20.58.130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	49.0	4.35e-01	84.0%	60.3%
1urfA00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.62	57.0	4.79e-01	100.0%	75.3%
4iv6B01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.62	49.0	3.81e-01	90.0%	38.8%
4nb5B02	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.61	53.0	4.95e-01	100.0%	87.5%
3ehfD01	1.20.5.1930	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.61	53.0	4.94e-01	100.0%	79.4%
3npiB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	49.0	3.37e-01	100.0%	32.9%
1eo0A00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.59	43.0	3.86e-01	82.0%	54.5%
2guzA00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.59	43.0	3.88e-01	88.0%	56.3%
2bg1A01	3.90.1310.40	Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) ›	0.58	51.0	4.43e-01	100.0%	66.2%
5fhiA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.57	48.0	3.48e-01	94.0%	51.1%
2elcA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.52	35.0	3.16e-01	70.0%	94.0%
3ph0C00	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	37.0	3.62e-01	86.0%	69.8%
2ekgB01	6.10.250.3270	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.52	45.0	4.39e-01	100.0%	96.4%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5016145	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.79	62.0	5.43e-01	96.0%	57.3%
4943532	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.79	65.0	5.70e-01	88.0%	82.9%
4981035	5058.1.1.16 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1	0.78	65.0	6.04e-01	96.0%	96.9%
4998576	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.78	69.0	6.02e-01	100.0%	70.7%
4671	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.75	61.0	4.65e-01	88.0%	59.1%
4309485	4229.1.1.2 ↗	alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase	0.74	69.0	4.04e-01	100.0%	47.3%
2893266	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.74	65.0	5.28e-01	98.0%	65.2%
3864955	633.22.1.6 ↗	alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › TMD0_ABC	0.73	56.0	3.83e-01	82.0%	27.6%
3447846	5010.1.1.6 ↗	extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › SPC12	0.73	60.0	6.14e-01	96.0%	95.8%
3630756	5043.1.1.2 ↗	extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12	0.73	61.0	5.60e-01	100.0%	81.4%
3966348	5058.1.1.16 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1	0.73	61.0	5.24e-01	98.0%	74.1%
4949269	5058.1.1.16 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1	0.72	61.0	5.24e-01	100.0%	58.8%
3953860	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.72	64.0	5.57e-01	100.0%	72.0%
2795737	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.71	62.0	5.52e-01	100.0%	98.6%
3555461	150.1.1.100 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TMD0_ABC	0.71	64.0	4.18e-01	100.0%	33.2%
3607406	6026.1.1.0 ↗	alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain	0.70	62.0	5.30e-01	100.0%	81.2%
3591320	5043.1.1.2 ↗	extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12	0.70	58.0	5.33e-01	100.0%	77.1%
4083492	192.4.1.1 ↗	alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29	0.70	54.0	4.96e-01	84.0%	69.2%
4935077	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.68	61.0	5.30e-01	100.0%	93.3%
3503329	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.68	61.0	4.91e-01	100.0%	68.4%
3283686	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.67	53.0	4.75e-01	88.0%	74.3%
4438700	622.1.1.0 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain	0.66	57.0	4.83e-01	98.0%	62.4%
4554416	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.65	54.0	4.53e-01	96.0%	55.6%
3302552	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.64	57.0	4.10e-01	100.0%	61.4%
3577293	633.22.1.0 ↗	alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR)	0.64	57.0	3.88e-01	100.0%	62.9%
3606827	150.5.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like	0.64	53.0	5.30e-01	88.0%	98.0%
3681481	3718.1.1.0 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT	0.64	56.0	4.11e-01	100.0%	42.2%
3628378	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.64	53.0	3.75e-01	96.0%	32.1%

D2 medium residues 38-126

PDB

Domain cluster: rep: IMGVR_UViG_3300005835_000012-3300005835-Ga0078910_1024307__D52-123

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7uvpA02	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.56	29.0	3.29e-01	97.8%	65.2%
1knzA02	3.30.70.1610	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	27.0	3.25e-01	91.0%	73.1%
2e9hA01	3.30.30.170	Alpha Beta › 2-Layer Sandwich › Defensin A-like ›	0.51	32.0	2.98e-01	100.0%	48.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4024381	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.52	32.0	3.36e-01	100.0%	67.5%