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MW980070.1__QXV74641.1__X__00019
Bact-VirMW980070.1__QXV74641.1__X__00019
Identity
- Accession:
- MW980070 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Chamilpavirus›
Rhizobium_phage_RHEph21
TaxID: 2836134
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-61
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mjgB00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.75 | 51.0 | 4.26e-01 | 70.5% | 49.5% |
| 3mjkA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.73 | 50.0 | 3.86e-01 | 70.5% | 38.8% |
| 4f0aB02 | 3.30.2460.20 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain | 0.71 | 49.0 | 4.79e-01 | 73.8% | 80.9% |
| 1nbwA02 | 3.90.470.30 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain | 0.66 | 45.0 | 3.39e-01 | 70.5% | 38.5% |
| 3u6yA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.64 | 45.0 | 3.89e-01 | 75.4% | 80.8% |
| 8gjaD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 45.0 | 3.01e-01 | 83.6% | 89.6% |
| 3ttqA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 45.0 | 3.01e-01 | 83.6% | 37.1% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 38.0 | 2.34e-01 | 72.1% | 37.5% |
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 41.0 | 2.55e-01 | 86.9% | 52.5% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 2.78e-01 | 77.0% | 81.2% |
| 2i6gB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.69e-01 | 78.7% | 54.3% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.51 | 42.0 | 2.60e-01 | 100.0% | 63.8% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 2.78e-01 | 73.8% | 52.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4544858 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.68 | 47.0 | 2.75e-01 | 70.5% | 62.4% |
| 3404839 | 385.1.1.0 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines | 0.67 | 45.0 | 3.70e-01 | 70.5% | 59.1% |
| 4156867 | 385.1.1.5 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › PDGF | 0.61 | 41.0 | 3.17e-01 | 70.5% | 29.7% |
| 4989866 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.61 | 43.0 | 2.99e-01 | 77.0% | 49.5% |
| 4313221 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.58 | 39.0 | 2.30e-01 | 70.5% | 9.2% |
| 4337983 | 601.7.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C | 0.57 | 46.0 | 2.74e-01 | 100.0% | 71.5% |
| None | — | 0.55 | 40.0 | 2.94e-01 | 82.0% | 70.1% | |
| 3268650 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 39.0 | 3.02e-01 | 78.7% | 59.3% |
| 329607 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.53 | 36.0 | 3.70e-01 | 70.5% | 90.9% |
| 5073316 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 2.45e-01 | 82.0% | 78.8% |
| 3088557 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.51 | 36.0 | 2.59e-01 | 75.4% | 28.5% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.10e-01 | 86.9% | 72.6% |