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MZ028627.1__QWS68160.1__SEA_VANLEE_43__00043

Bact-Vir

MZ028627.1__QWS68160.1__SEA_VANLEE_43__00043

Identity

Accession:
MZ028627 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kruegerviridae› Vanleevirus› Gordonia_phage_VanLee

TaxID: 2845816

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-111
PDB
Domain cluster: rep: IMGVR_UViG_3300018025_000245-3300018025-Ga0187885_1000935215__D96-167
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 52.0 5.91e-01 89.2% 82.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 47.0 5.92e-01 90.4% 94.1%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 49.0 5.25e-01 89.2% 70.4%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 53.0 6.33e-01 85.5% 98.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 53.0 6.29e-01 85.5% 98.3%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 52.0 6.20e-01 90.4% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 53.0 5.33e-01 73.5% 70.2%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 52.0 5.93e-01 91.6% 90.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 53.0 5.86e-01 85.5% 88.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.50e-01 98.8% 75.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 50.0 5.80e-01 86.7% 93.3%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 55.0 5.16e-01 84.3% 63.3%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.76 43.0 5.38e-01 90.4% 94.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 53.0 5.46e-01 88.0% 75.9%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 52.0 4.57e-01 90.4% 50.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 4.91e-01 74.7% 71.2%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 50.0 5.21e-01 94.0% 75.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 44.0 4.93e-01 88.0% 76.6%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 42.0 5.13e-01 86.7% 88.9%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.99e-01 81.9% 97.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 44.0 5.33e-01 88.0% 94.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.71 48.0 4.57e-01 95.2% 59.2%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 48.0 5.47e-01 85.5% 95.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 54.0 5.92e-01 89.2% 100.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 43.0 4.94e-01 73.5% 85.0%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 46.0 5.35e-01 90.4% 100.0%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 5.69e-01 90.4% 100.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 41.0 3.73e-01 71.1% 44.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.52e-01 73.5% 78.8%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.27e-01 89.2% 89.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 5.12e-01 94.0% 92.3%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 38.0 3.96e-01 81.9% 74.0%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 45.0 4.50e-01 100.0% 83.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 36.0 3.86e-01 81.9% 76.1%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.42e-01 91.6% 87.6%
2k14A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.73e-01 74.7% 73.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 4.34e-01 100.0% 91.7%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 38.0 4.03e-01 94.0% 98.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.91 47.0 6.06e-01 86.7% 86.0%
4640515 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 45.0 5.82e-01 86.7% 86.0%
4305196 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 44.0 5.69e-01 86.7% 84.0%
3821919 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.85 49.0 5.71e-01 92.8% 80.0%
3941133 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 56.0 5.90e-01 88.0% 74.7%
4031578 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 43.0 5.50e-01 81.9% 84.0%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.85 45.0 5.48e-01 86.7% 80.0%
3715776 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 45.0 5.10e-01 77.1% 69.2%
3523918 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.83 53.0 5.92e-01 91.6% 83.1%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.82 53.0 5.99e-01 86.7% 84.6%
3623786 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.82 53.0 5.97e-01 86.7% 84.6%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 54.0 5.44e-01 84.3% 68.2%
3512420 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 55.0 5.45e-01 85.5% 69.4%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 54.0 5.73e-01 89.2% 78.7%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.98e-01 85.5% 90.8%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 54.0 5.96e-01 72.3% 98.5%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.77 45.0 4.95e-01 85.5% 71.0%
3585447 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 54.0 5.49e-01 88.0% 75.0%
3501560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.20e-01 72.3% 82.2%
5033242 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.75 50.0 5.05e-01 95.2% 68.2%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 54.0 6.08e-01 90.4% 96.9%
3999509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.31e-01 89.2% 71.1%
3713613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.97e-01 98.8% 96.9%
4508412 4.1.1.437 ↗ beta barrels › SH3 › SH3 › SH3 › PF29224 0.73 50.0 5.78e-01 91.6% 98.3%
4972872 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 39.0 5.07e-01 86.7% 97.8%
4284778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 50.0 5.26e-01 78.3% 80.0%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 47.0 5.04e-01 78.3% 78.6%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 48.0 5.05e-01 71.1% 77.3%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.71 50.0 5.60e-01 91.6% 95.4%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 43.0 4.74e-01 73.5% 78.5%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 5.09e-01 86.7% 88.3%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 49.0 5.12e-01 80.7% 80.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 46.0 4.98e-01 75.9% 82.6%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 45.0 4.98e-01 74.7% 86.2%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 4.96e-01 73.5% 88.3%
3500448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.96e-01 81.9% 84.6%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 44.0 4.78e-01 73.5% 83.1%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.68 42.0 4.76e-01 81.9% 83.9%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 51.0 5.67e-01 89.2% 100.0%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 45.0 4.88e-01 78.3% 82.6%
3978088 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.31e-01 88.0% 95.4%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 41.0 4.43e-01 89.2% 74.3%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.66 43.0 4.38e-01 86.7% 68.8%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.56e-01 77.1% 82.9%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 45.0 4.72e-01 81.9% 85.3%
3858084 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.61 54.0 4.48e-01 95.2% 63.6%
5041872 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 45.0 4.71e-01 81.9% 86.7%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 45.0 4.72e-01 81.9% 87.8%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.46e-01 100.0% 62.5%
3590315 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 44.0 4.61e-01 81.9% 86.7%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.58 47.0 4.81e-01 98.8% 91.3%
5018743 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 42.0 4.41e-01 81.9% 86.7%
4002498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 47.0 4.50e-01 100.0% 89.5%