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MZ028627.1__QWS68200.1__SEA_VANLEE_83__00083

Bact-Vir

MZ028627.1__QWS68200.1__SEA_VANLEE_83__00083

Identity

Accession:
MZ028627 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kruegerviridae› Vanleevirus› Gordonia_phage_VanLee

TaxID: 2845816

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a2fA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.71 54.0 4.33e-01 100.0% 41.3%
1djxA02 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.66 50.0 3.22e-01 81.7% 23.5%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.55 41.0 2.81e-01 86.7% 58.3%
1vd6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.55 43.0 3.00e-01 88.3% 33.5%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.58e-01 73.3% 67.2%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 35.0 2.32e-01 70.0% 20.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 2.68e-01 76.7% 42.2%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 39.0 2.86e-01 80.0% 53.7%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.52 36.0 3.44e-01 73.3% 67.6%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 34.0 2.90e-01 70.0% 66.0%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.51 31.0 2.90e-01 98.3% 41.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037381 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.75 51.0 5.58e-01 75.0% 86.0%
1401875 2002.1.1.20 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PI-PLC-Y,PI-PLC-X 0.72 52.0 3.32e-01 76.7% 24.2%
3040109 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.70 49.0 5.42e-01 73.3% 91.5%
3415237 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 50.0 3.38e-01 76.7% 21.4%
3999380 2002.1.1.20 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PI-PLC-Y,PI-PLC-X 0.68 53.0 3.51e-01 88.3% 21.7%
5026377 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.67 47.0 4.31e-01 75.0% 86.3%
3512778 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.67 46.0 4.02e-01 73.3% 92.6%
3801860 2002.1.1.20 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PI-PLC-Y,PI-PLC-X 0.65 52.0 3.30e-01 86.7% 18.3%
3604410 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.60 40.0 2.84e-01 70.0% 30.6%
3285549 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.59 42.0 2.98e-01 80.0% 23.0%
3635967 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.59 42.0 2.75e-01 75.0% 44.9%
3924553 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.57 41.0 3.55e-01 76.7% 73.7%
3963007 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 47.0 2.96e-01 100.0% 18.0%
3691098 10.12.1.54 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.54 42.0 2.88e-01 91.7% 85.3%
3619978 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.74e-01 91.7% 47.2%
4964361 502.1.1.3 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 0.53 39.0 3.77e-01 83.3% 68.6%
3633100 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.53 43.0 2.61e-01 96.7% 62.2%
3413287 11.1.1.796 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Shg 0.53 38.0 2.83e-01 76.7% 32.9%
3388785 109.1.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.53 38.0 2.85e-01 78.3% 61.8%
3199319 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 42.0 2.59e-01 96.7% 61.2%
3807532 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 2.44e-01 91.7% 32.6%
3355764 7579.1.1.124 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH, Hydrolase_4 0.51 36.0 2.36e-01 73.3% 50.4%
3359616 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.50 38.0 3.14e-01 90.0% 95.5%