Back to structures

MZ028627.1__QWS68218.1__SEA_VANLEE_101__00101

Bact-Vir

MZ028627.1__QWS68218.1__SEA_VANLEE_101__00101

Identity

Accession:
MZ028627 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 3.80e-01 75.0% 55.5%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 3.75e-01 75.0% 55.3%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 3.80e-01 75.0% 62.0%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 3.80e-01 75.0% 58.1%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 3.56e-01 75.0% 44.6%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 3.92e-01 82.1% 65.7%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 3.87e-01 75.0% 73.7%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.69 35.0 3.13e-01 83.9% 34.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.09e-01 75.0% 83.9%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 3.72e-01 75.0% 62.7%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 3.60e-01 75.0% 59.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 3.88e-01 75.0% 75.2%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 3.46e-01 75.0% 55.6%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 3.63e-01 75.0% 63.8%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.10e-01 100.0% 49.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.39e-01 100.0% 29.1%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.50e-01 75.0% 57.6%
3aafA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.68e-01 75.0% 89.0%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 3.67e-01 82.1% 64.0%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.62 42.0 2.75e-01 71.4% 32.0%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 43.0 3.37e-01 75.0% 89.0%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.74e-01 76.8% 82.4%
2xzmT00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.16e-01 75.0% 82.0%
4jz6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.60 46.0 3.07e-01 87.5% 77.1%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.60 48.0 3.89e-01 92.9% 53.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.24e-01 76.8% 62.0%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 3.82e-01 92.9% 61.9%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.59 47.0 3.94e-01 92.9% 52.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.20e-01 76.8% 64.9%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 46.0 3.54e-01 96.4% 72.3%
1knzA02 3.30.70.1610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.92e-01 76.8% 71.2%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.09e-01 100.0% 58.2%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.99e-01 83.9% 35.9%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.88e-01 94.6% 34.9%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.54 44.0 3.79e-01 100.0% 64.4%
3djlA02 6.10.250.600 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 36.0 3.72e-01 100.0% 75.9%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.53 43.0 3.08e-01 96.4% 49.7%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.57e-01 100.0% 59.7%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 41.0 3.48e-01 92.9% 79.6%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.52 36.0 2.54e-01 75.0% 73.4%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 35.0 3.22e-01 91.1% 52.6%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.51 38.0 3.44e-01 80.4% 72.7%
8p5sA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 42.0 2.88e-01 98.2% 66.5%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 37.0 3.23e-01 91.1% 48.4%
2ebnA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 41.0 2.72e-01 100.0% 53.0%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.50 39.0 3.02e-01 98.2% 80.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895815 327.16.1.13 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › KH_PARP14_2 0.74 46.0 4.30e-01 87.5% 50.0%
1888715 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.71 50.0 3.77e-01 75.0% 55.1%
3954543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.71 50.0 3.70e-01 75.0% 61.5%
3407169 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.70 47.0 3.90e-01 71.4% 89.5%
3971712 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.70 49.0 3.76e-01 75.0% 65.4%
3838246 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 49.0 3.94e-01 100.0% 39.1%
3693835 601.1.1.90 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 0.68 48.0 3.42e-01 75.0% 81.8%
3716076 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.68 47.0 4.21e-01 71.4% 100.0%
4928059 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.67 47.0 3.62e-01 75.0% 65.4%
5067775 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.11e-01 75.0% 89.4%
4817079 327.11.2.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_8 0.66 46.0 4.15e-01 87.5% 51.2%
3739576 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.66 49.0 4.95e-01 91.1% 81.8%
4991749 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 3.66e-01 78.6% 57.8%
5073703 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.65 41.0 4.32e-01 87.5% 72.0%
3502008 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.64 55.0 4.39e-01 98.2% 58.3%
3573007 327.11.2.79 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_1, KH_PARP14_2 0.64 49.0 3.68e-01 87.5% 33.3%
4649222 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 45.0 3.47e-01 75.0% 65.4%
3281670 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.62 46.0 3.30e-01 80.4% 82.9%
3594005 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 3.21e-01 76.8% 49.1%
3604748 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 3.02e-01 76.8% 37.7%
5049078 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 44.0 3.32e-01 76.8% 58.6%
5017399 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 46.0 3.38e-01 82.1% 58.7%
5062171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.39e-01 82.1% 82.7%
3429256 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 40.0 2.46e-01 73.2% 10.5%
4966158 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.59 41.0 4.02e-01 89.3% 66.2%
3699463 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 47.0 3.24e-01 94.6% 57.2%
3610454 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 46.0 2.82e-01 94.6% 37.4%
4121773 1075.1.1.20 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane+PDR_CDR 0.58 49.0 2.80e-01 100.0% 16.4%
4946324 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.58 42.0 2.88e-01 80.4% 37.3%
4284035 109.4.1.382 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS 0.58 47.0 2.95e-01 94.6% 19.1%
3242822 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 42.0 2.58e-01 80.4% 17.9%
3520880 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 46.0 2.65e-01 100.0% 13.0%
3245190 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 43.0 2.69e-01 87.5% 53.1%
3397315 603.2.1.12 alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.57 44.0 2.75e-01 91.1% 46.0%
3723257 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.57 37.0 3.36e-01 73.2% 44.7%
4056199 7516.1.1.10 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC 0.56 40.0 2.67e-01 76.8% 20.1%
4965624 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.56 43.0 2.95e-01 94.6% 70.7%
4440301 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.56 43.0 4.42e-01 100.0% 89.1%
3582590 3291.1.1.9 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 0.55 36.0 2.93e-01 71.4% 30.8%
3420416 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.55 39.0 3.07e-01 73.2% 62.3%
3718634 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.55 43.0 2.95e-01 94.6% 60.8%
3380612 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 37.0 2.83e-01 80.4% 28.6%
3404460 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.54 38.0 2.37e-01 76.8% 22.6%
3759086 3016.1.1.21 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.54 40.0 3.14e-01 87.5% 35.9%
4588382 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.54 43.0 2.48e-01 94.6% 23.9%
4507562 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.53 40.0 4.07e-01 100.0% 85.5%
5023652 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.21e-01 100.0% 45.4%
3722268 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 43.0 3.13e-01 100.0% 57.4%
3512529 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 41.0 3.07e-01 89.3% 39.4%
3589191 142.1.1.10 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.53 36.0 3.44e-01 73.2% 71.4%
3783550 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.53 42.0 2.40e-01 94.6% 18.6%
3593736 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.53 38.0 3.34e-01 83.9% 98.0%
4130197 109.4.1.382 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS 0.53 42.0 2.66e-01 94.6% 40.6%
3946654 517.2.1.0 beta barrels › CBF-like › TraF › TraF 0.52 37.0 2.46e-01 82.1% 16.0%
3176170 109.4.1.1369 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3, MIF4G 0.52 43.0 2.49e-01 100.0% 27.3%
3846092 109.4.1.554 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurochondrin 0.52 41.0 2.34e-01 92.9% 10.6%
3401287 603.2.1.12 alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.51 38.0 2.40e-01 89.3% 43.3%
3213842 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 38.0 2.56e-01 87.5% 59.6%
3215155 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.50 42.0 2.72e-01 100.0% 82.0%
3788781 246.2.1.7 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.50 41.0 2.55e-01 100.0% 60.5%